Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00927 ATGGAGAGCACCGACTCGTCAACCGGTTCACAGCAGCAACCGCAATTGCCACCTGGGTTCCGCTTCCACCCCACCGACGAGGAGCTCGTGGTTCACTACCTCAAGAAAAAAGCAGCTTCGGTTCCTCTTCCTGTGGCCATAATCGCTGAGGTTGATCTCTACAAGTTCGATCCATGGGAGCTTCCCGCTAAGGCCACGTTTGGAGAGCAGGAGTGGTACTTCTTTAGTCCGAGAGACAGGAAGTATCCGAACGGCGCGCGGCCAAACAGGGCGGCCACATCTGGGTATTGGAAGGCCACTGGGACTGACAAGCCTGTGTTGACCTCTGGGGGAACCCAGAAGGTTGGGGTGAAAAAGGCTTTGGTTTTCTATGGAGGGAAGCCCCCAAGAGGGATTAAAACTAATTGGATCATGCATGAGTATAGGCTTGCTGATAACAAGCCTAACAATAGGCCTCCTGGCTGTGACTTGGGCAACAAGAAAAACTCTCTAAGGCTTGATGATTGGGTGCTGTGCCGAATCTACAAGAAGAGCAACACGCACAGGTCTCCCATGGAGCATGACAGGGAAGATTCAATGGAAGATATGATTGGAGGGATTCCTCCTTCCATCAACGTGGGCCACATGAATGGGAGGTATCATCTTTCAAAGATGACCACAGGCTACAGCAGTGCATTGCTGGAAAATGACCACAACTTGCTGGAAGGGATGATGATAGGTAACGGATCAGTGATGAACACAAGTACTACTACTACTACACCTGGTGCCATGTCATCATCTCAGTTGGGGGCCTCAAACTCCAAGGCAGAGCTTTCTTTTGTGCCAACCATGACCCACTCTTCCAACACTTCTAAGAGAACACTCTCTTCGCTGTATTGGAATGATGAGGATGTGGCTGGCGCCTCATCATCCAACAAGAGGTTCAATTTGGAAAGTGGGGACAACAATCATGGAGGTGTTGTGAGAACTGATCAAGATAATGGCACTGCCACCTCTATAGCCACTCTGCTTAACCAGCTCCCTCAAACCCCTTCATTGCACCAACAATCAATGTTGGGATCAATAGGCGATGGACTACTTAGGACAACATATCAAATACCAGGAATGAATTGGTATGCTTAG 1122 0.4947 MESTDSSTGSQQQPQLPPGFRFHPTDEELVVHYLKKKAASVPLPVAIIAEVDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGTQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNRPPGCDLGNKKNSLRLDDWVLCRIYKKSNTHRSPMEHDREDSMEDMIGGIPPSINVGHMNGRYHLSKMTTGYSSALLENDHNLLEGMMIGNGSVMNTSTTTTTPGAMSSSQLGASNSKAELSFVPTMTHSSNTSKRTLSSLYWNDEDVAGASSSNKRFNLESGDNNHGGVVRTDQDNGTATSIATLLNQLPQTPSLHQQSMLGSIGDGLLRTTYQIPGMNWYA* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00927 373 ProSiteProfiles NAC domain profile. 16 177 IPR003441 GO:0003677|GO:0006355
Lapu5g00927 373 MobiDBLite consensus disorder prediction 1 21 - -
Lapu5g00927 373 FunFam NAC transcription factor 56 25 182 - -
Lapu5g00927 373 SUPERFAMILY NAC domain 10 177 IPR036093 GO:0003677|GO:0006355
Lapu5g00927 373 PANTHER NAC TRANSCRIPTION FACTOR 56 16 220 - -
Lapu5g00927 373 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Lapu5g00927 373 Gene3D NAC domain 25 182 IPR036093 GO:0003677|GO:0006355
Lapu5g00927 373 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00927 Lapu-Chr5 15668167 15670535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00927 1 373 NAC Transcription Factor Family AT3G15510 53.316 2.09e-126 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu5g00927 NAM 2.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00927 - - vra:106763825 697.967