Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00922 ATGAACGGTAAGGCAAACGTCACCAAAGAGCTCAACGCCAAGCACAAGAAGATACTGGAAGGACTTCTTAAATTACCAGATAATAGGGAATGTGCTGACTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATATGTATGCAGTGTTCAGGAATACATCGAAGTTTGGGTGTACATATATCAAAGGTTCGTTCTGCAACCCTTGACACTTGGCTTCCAGAGCAAGTTGCATTCATTCAATCAATGGGAAATGAGAAAGCAAATAACTACTGGGAAGCAGAATTACCACCACATTATGATAGAGTTGGAATTGAGAATTTCATTCGTGCAAAGTATGATGAGAAGAGATGGGTTCCAAGAGATGGAAATCCAAAAACACCTTCTGGATTGCGGGAAGAGAGAAGTCCTTCACATTGGCAGAGACCTGTGGAGAGAAGTGGTCATGCTGCTGTTTCTGAAAATACTTTTGAGGAAAGGAAGAAATTCCAACCGTCAAATGCAATTCCTGCTACAAGAAATAGTGCTCCTGCTCCTGTTTCTGTTTCTGTTTCTGCTCCTGCACCTCCCAGAGCACCTGAGCAAGTAACTCCTATAACCAAACCTCAGCCTGTTGAGAAAGTGGAACCATTAGCACCACAGCCCCAAGCTGAATCTTCAAAGCAGGCTGTGGACGCAGCTCAAAATACCCCTCCAAAAGTTGACTATGCTACAGACCTTTTCAACATGTTGTCCATGGATGTCCCCAAAGAAAAGGGCTCCGAGACAGACAGTACAACTGCTGATGATAATCTCTGGGCAGGTTTTCAGTCTGCTGCAAAGGTGTCAACAGCTGAGAAGACTAGTCAGCCCAAAGCAGCTGATAATAGTACTCCACCGTCTGCGACTGGTATTGAGGATCTTTTCAAAGATTCACCTTCTATAAGCTTAGCTCCAGGAAAGCCACAGAAAGATGTTAAAAATGATATAATGAGCCTCTTTGAGAAGGGCAATATGGTGTCCCCTTTTTCTATGCATCAGCAGCAGCTTGCGATGCTTGCACAGCAGCAGTCTCTTCTAATGGCTGCTGCAGCTAAATCTTCTGCTGGGGATCCCAGGTATCCTGCTGGCATACAAGAACCTAGACCCAATGTTCCTATGCAAAATTGGCCAGCTACTGGCTACTCGATTTCTGGAGTTATGCCCATGCATGTAATGACTGAAGGTCAGACTAGGAACATGACCCCAGCTCATTTTGCCGGGAGCTCAGTACAACATCAACCATCCAATTTCTATGGTATGGGGCAAGTTCCACCTCCAGTTAACGGTATGATGACCATGGGAGCGAGTAAACCTCAGTCAGGAGCTCCAGTGTCATCTAGCACTACACAGTCAGCGAAGGATTATGATTTTTCGTCCTTAACACAGGGGATGTTTGCGAAACATTGA 1440 0.4493 MNGKANVTKELNAKHKKILEGLLKLPDNRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANNYWEAELPPHYDRVGIENFIRAKYDEKRWVPRDGNPKTPSGLREERSPSHWQRPVERSGHAAVSENTFEERKKFQPSNAIPATRNSAPAPVSVSVSAPAPPRAPEQVTPITKPQPVEKVEPLAPQPQAESSKQAVDAAQNTPPKVDYATDLFNMLSMDVPKEKGSETDSTTADDNLWAGFQSAAKVSTAEKTSQPKAADNSTPPSATGIEDLFKDSPSISLAPGKPQKDVKNDIMSLFEKGNMVSPFSMHQQQLAMLAQQQSLLMAAAAKSSAGDPRYPAGIQEPRPNVPMQNWPATGYSISGVMPMHVMTEGQTRNMTPAHFAGSSVQHQPSNFYGMGQVPPPVNGMMTMGASKPQSGAPVSSSTTQSAKDYDFSSLTQGMFAKH* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00922 479 CDD ArfGap 19 117 - -
Lapu5g00922 479 MobiDBLite consensus disorder prediction 279 303 - -
Lapu5g00922 479 MobiDBLite consensus disorder prediction 122 237 - -
Lapu5g00922 479 MobiDBLite consensus disorder prediction 444 466 - -
Lapu5g00922 479 MobiDBLite consensus disorder prediction 122 146 - -
Lapu5g00922 479 Pfam Putative GTPase activating protein for Arf 17 123 IPR001164 GO:0005096
Lapu5g00922 479 Gene3D Arf GTPase activating protein 2 129 IPR038508 -
Lapu5g00922 479 FunFam stromal membrane-associated protein 1 isoform X1 1 128 - -
Lapu5g00922 479 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Lapu5g00922 479 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Lapu5g00922 479 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 479 IPR044520 GO:0005096
Lapu5g00922 479 MobiDBLite consensus disorder prediction 279 300 - -
Lapu5g00922 479 MobiDBLite consensus disorder prediction 187 201 - -
Lapu5g00922 479 MobiDBLite consensus disorder prediction 171 185 - -
Lapu5g00922 479 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Lapu5g00922 479 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Lapu5g00922 479 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Lapu5g00922 479 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00922 Lapu-Chr5 15448214 15457678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00922 16 123 C2H2 Transcription Factor Family AT4G05330 48.276 3.68e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00922 K12486 - gmx:100789910 744.191