Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00914 ATGGCCACCTCTGACTCTGTCCCGGACTCACGTGTCTCACGCATGCACTACTCCTCCACTGACGACGACCAAGACGACGATGACGAGGAAGACAACGACCTTCACTTCTACGACACCAATGTCGGCGCCGAAGACGAGCCCGAGAAGCCAGAGACTGTTTCCGGCGGCGGTTTCCGGCGGGAGTTCGGGGTGGTGCTGGACCCGCGAGCCAAGTGGGTCCAAGAATGGAACAGGGTGTTCCTCCTGGTGTGCGCCACGGGGCTTTTCGTGGACCCGCTGTTCTTCTACGCGCTATCCATAAGCGACACGTGTATGTGTCTCTTCGTCGACGGCTGGCTGGTGGTCACCGTGACCGTGCTCCGGTGCATGACCGACGGGTTGCACGTGTGGAACATGTGGCTCCATTTCAAGATGGCTAAACGCTCTTCTTTTCTCACCAGAGACCCTTACGCCTCGCGCGGTGGCTATGCTCTTCGCTACCTCAAGGCTAAGAGGGGCTTCTTCTTCGACCTCTTCGTCATACTCCCCATTCCCCAGATAGTGCTATGGGTGGCCATTCCCTCTCTGTTGGAGAAAGGATCAATTACGTTGGTGATGACAGTGTTCTTAATCATGTTCCTCTTTCAATATCTTCCCAAAATTTATCACTCCGTTTGCCTCTTGCGTCGCATGCAAAACCTCTCTGGCTACATTTTTGGAACCGTTTGGTGGGGTATCGCTCTCAACCTCATCGCATATTTTGTAGCTTCCCATGCAGCAGGGGCATGTTGGTACTTGTTAGGGTTGCAAAGGGCAGCAAAGTGCTTGGAAGAACAGTGTGCAAAAACAGCTGGTTGTGGCTTGAGAACACTGTGCTGCAAAAAGCCTATCTACTATGGAGGCACTAGCATTGTAAGGGACAAAACCAGATTGTCATGGGCTGAAAACAGGGAAGCAAGGTCTACTTGTTTGGACAGTGCTGATAACTACGATTATGGTGCATACGCATGGTCTGTTCAACTCGTCACAAATGATAGCAGATTGGAAAAGATACTTTTCCCTATCTTCTGGGGCCTAATGACTCTCAGCACTTTTGGGAACCTAGAGAGCACACCGGAGAGGCTAGAAGTGATTTTCAACATTATTGTGTTGACTAGTGGCCTCCTTCTAGTGACCATGCTGATTGGAAACATAAAGGTGTTTTTGCATGCGACAACATCAAAGAAGCAAGCAATGCAACTGAAGATGAGGAACATTGAATGGTGGATGAGCAAAAGGAGGTTGCCACAAGGGTTCCGGCAGCGCGTGAGAAACTATGAGAGGCAGCGTTGGGCTGCGGTGCGAGGGGTTGACGAATGCCAGATTATAAAGAATCTCCCTGAGGGACTCAGAAGAGACATCAAGTACCATCTTTGTTTGGATTTGGTGAGACAGGTGCCACTGTTTCAGCATATGGATGATTTGGTGCTAGAGAACATTTGTGACCGTGTGAAGTCCCTTGTCTTCACAAAAGGAGAAACAATAACGAGAGAGGGAGACCCAGTTCAGAGAATGTTATTTGTAGTAAGGGGTCACCTTCAAAGCAGCCAAGTCCTACGAGACGGGGTGAAAAGTTACTGCATGTTAGGCCCTGGGAACTTCAGCGGCGACGAGCTTCTTTCATGGTGTTTGAGAAGGCCCTTCATAGAGCGTCTTCCACCGTCATCAAGCACCTTGGTAACACTTGAAGCGACGGAGGCATTTGGGCTAGAAGCAATGGACGTGAAGTACGTGACACAGCACTTCAGGTACACATTTGTGAAGGAAAAGGTTAAGAGAAGTGCTAGGTATTACTCCCCAGGGTGGAGAACTTGGGCTGCAGTGGCCATTCAGTTGGCTTGGAGAAGGTATAGGCACCGTTTGACTTTGACATGTTTGTCCTTCATAAGGCCTCGCAGACCTGCTTCCAGGTGCACTTCCATGGAAGAGGACAGGCTTCGTCTCTATACAGCTTTGTTAACCTCACCAAAGCCTAATCAGGATGACTTTGACTTCTGA 2016 0.5005 MATSDSVPDSRVSRMHYSSTDDDQDDDDEEDNDLHFYDTNVGAEDEPEKPETVSGGGFRREFGVVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISDTCMCLFVDGWLVVTVTVLRCMTDGLHVWNMWLHFKMAKRSSFLTRDPYASRGGYALRYLKAKRGFFFDLFVILPIPQIVLWVAIPSLLEKGSITLVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIALNLIAYFVASHAAGACWYLLGLQRAAKCLEEQCAKTAGCGLRTLCCKKPIYYGGTSIVRDKTRLSWAENREARSTCLDSADNYDYGAYAWSVQLVTNDSRLEKILFPIFWGLMTLSTFGNLESTPERLEVIFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMSKRRLPQGFRQRVRNYERQRWAAVRGVDECQIIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLVFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSYCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLVTLEATEAFGLEAMDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTCLSFIRPRRPASRCTSMEEDRLRLYTALLTSPKPNQDDFDF* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00914 671 Gene3D Jelly Rolls 472 590 IPR014710 -
Lapu5g00914 671 CDD CAP_ED 474 589 IPR000595 -
Lapu5g00914 671 MobiDBLite consensus disorder prediction 35 55 - -
Lapu5g00914 671 Pfam Ion transport protein 76 391 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu5g00914 671 ProSiteProfiles cAMP/cGMP binding motif profile. 474 553 IPR000595 -
Lapu5g00914 671 SMART cnmp_10 474 603 IPR000595 -
Lapu5g00914 671 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 52 667 - -
Lapu5g00914 671 Pfam Cyclic nucleotide-binding domain 494 578 IPR000595 -
Lapu5g00914 671 FunFam Cyclic nucleotide-gated ion channel 1 401 465 - -
Lapu5g00914 671 Gene3D Helix hairpin bin 399 465 - -
Lapu5g00914 671 SUPERFAMILY cAMP-binding domain-like 400 588 IPR018490 -
Lapu5g00914 671 MobiDBLite consensus disorder prediction 1 55 - -
Lapu5g00914 671 FunFam cyclic nucleotide-gated ion channel 4 472 590 - -
Lapu5g00914 671 SUPERFAMILY Voltage-gated potassium channels 68 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00914 Lapu-Chr5 15019095 15028503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00914 62 670 Ion Channels AT5G54250 78.479 0.0 998
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00914 K05391 - gmx:100800795 1198.34