Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00908 ATGGACTCTCAACAGCTTTTCAGTTTTGGTGTTGCTAGTGCTGGATTACCTTACATTCCATCTTTTCCCACTGTTCCATCCCTACCCAACAGGCTGCTTGGATCCTTGAAATATGACACTGGAAACTCACCTAATTCGCCCTTTTCCACTTATTTTGATTCTGACACCCTTTCCGCATTGAGTGACTGCCAGGAGCAATACAGCCCCGGCGAAATCCTCTCTGGTGTCAGCTCATCTTGTAACTCTTCACTGGAAACCAACCATAATATGTATAGATCAATCTCATCTGTGGACTTCATAGACAATTTCCCACTATATTCTGCTTGGAACTCTCTTCCACAGAATCTGAATTGTAATCAGAAAATCCAACACGCTTTGCTGGAGCTAGAAACTGTTCTGATGGCCCCTGATGATGATCAAGTTACTACACCAAATACATTGGCTGAGAGCAGCAGACCAATGGCATCTGGCCAGAGATACAGGCCCTGGAGCCATGAGAACCATGTCTCACAATATACTCAACCATCATATGTTCCCAGCAGTAGGCTGTCAAGTGAAGTTGTGCATGTAGAGAAACGGCAAAAGTTGATGGAGGAACCATCACTTCAAGCTTTCCCACCAAACAATTTGAAGCAATTGCTGATTGCATGTGCCAAAGCCATTCATGAAAACAACATGAAAGATTTTGATCAATTGGTAGGAAAGGCTAGAGATGCTGTCTCCATCAATGGGGAGCCAATCCAGCGGCTTGGCGCTTACATGGTAGAAGGGCTTGTTGCTAGGAAGGAAGCATCAGGGAAGAGCATCTATCACGCCCTTAGGTGCAGAGAGCCTGAAGGTGAAGAATTACTCTCCTACATGCAACTGCTGTTTGAGATCTGCCCCTACCTAAAATTTGGTTACATGGCTGCCAATGGAGCCATTGCGGAAGCCTGCAGAAATGAGGATCGCATACACATCATAGACTTCCAAATTGCTCAGGGATCTCAATGGATGACTCTTCTTCAAGCCCTTGCAGCAAGACCTGGTGGTGCTCCCCATGTTCGGATCACGGGGATTGATGATCCTGTTTCTAAATATGCACGTGGAGACGGATTAGAGATCGTTGGGAAAAGGTTGGCCATGATGTCTGAGAAATTTGGCATTCCAGTTGAGTTTCATGGAGTCCCTGTTTTTGCTCCAGAAGTGACAAGGGAAATGCTAGATATCAGGCCTGGAGAGGCCTTGGCTGTGAACTTCCCCTTGCAGCTCCATCACACAGCTGATGAGAGTGTTCATGTGAGTAACCCAAGGGATGGACTATTGAGATTGGTAAAGTCACTCTCTCCCAAGGTGACCACACTGGTGGAGCAGGACTCAAACACCAACACAACCCCTTTCTTCAATAGGTTTATGGAAACCTTGGATTACTACTTGGCAATCTTTGAGTCTATTGATGTAACCCTCCCAAGAGATAGCAAGGAGCGGATCAATGTGGAGCAACATTGTCTGGCCAGGGATATAGTGAATATTATTGCTTGTGAAGGCAAGGAAAGGGTTGAGAGACATGAACTATTGGGCAAGTGGAAATCCAGGTTAACAATGGCTGGCTTCAGTCAATGTCCTTTGAGCTCTTATGTGAATTCTGTCATAGGAAGCCTTCTGAAGTGCTATTCAGAACATTATACTCTAGTGGAGAAGGATGGAGCAATGTTGTTGGGATGGAAGGACAGAAATTTGATATCAGCTTCAGCCTGGCATTGCTGA 1746 0.4553 MDSQQLFSFGVASAGLPYIPSFPTVPSLPNRLLGSLKYDTGNSPNSPFSTYFDSDTLSALSDCQEQYSPGEILSGVSSSCNSSLETNHNMYRSISSVDFIDNFPLYSAWNSLPQNLNCNQKIQHALLELETVLMAPDDDQVTTPNTLAESSRPMASGQRYRPWSHENHVSQYTQPSYVPSSRLSSEVVHVEKRQKLMEEPSLQAFPPNNLKQLLIACAKAIHENNMKDFDQLVGKARDAVSINGEPIQRLGAYMVEGLVARKEASGKSIYHALRCREPEGEELLSYMQLLFEICPYLKFGYMAANGAIAEACRNEDRIHIIDFQIAQGSQWMTLLQALAARPGGAPHVRITGIDDPVSKYARGDGLEIVGKRLAMMSEKFGIPVEFHGVPVFAPEVTREMLDIRPGEALAVNFPLQLHHTADESVHVSNPRDGLLRLVKSLSPKVTTLVEQDSNTNTTPFFNRFMETLDYYLAIFESIDVTLPRDSKERINVEQHCLARDIVNIIACEGKERVERHELLGKWKSRLTMAGFSQCPLSSYVNSVIGSLLKCYSEHYTLVEKDGAMLLGWKDRNLISASAWHC* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00908 581 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 170 576 IPR005202 -
Lapu5g00908 581 Pfam GRAS domain family 210 579 IPR005202 -
Lapu5g00908 581 ProSiteProfiles GRAS family profile. 201 580 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00908 Lapu-Chr5 14587710 14591354 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00908 201 579 GRAS Transcription Factor Family AT5G48150 63.947 6.33e-174 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lapu5g00908 GRAS 2.6e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00908 - - gmx:100799073 1013.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00908 5 14587710 14591354 Lapu5g00908 5 14587710 14591354 ECH
Lapu5g00908 5 14587710 14591354 Lapu5g00908 5 14587710 14591354 PCT