Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00887 ATGAAAAACCTCCTTCTCATGCTCGTTCTTACTTCGTGGTTTTTTTTCCGCACCTCCACTGCAGATGATTCTATAGCCTTATTTCAGTCACTTCCTGTTGGCAAGACCTTGGTTTCTGAAGAGGGTACTTTTGAATTGGGTTTCTTCAGTGCAGGAAGTGCTGCAGATCTTTACTTGGGGATATGGTACAAGTCAATACCAGTGAAGACTGTTGTGTGGGTTGCCAATAGAGCCAAGCCAGTAAAAGGCAACTCTAGCATGTTGCATATTAACAGTGAGGGAAATCTTGAGCTTGTTAACGATAATGGAGTTGTGGTTTGGTCTGCAAACTCCAGAAAAAAGGTTCAGAATCCCATTGTTCAGCTTTTAAATTCTGGGAATTTGGTACTGAGATATGAGGGAGCCCAAGATCATGAAAGCTACTTGTGGGAAAGTTTTGATTACCCTTCTGATACACTTTTACCAGGAATGAAGCTGGGTTGGGACTTAAGAACCGGCCTGGAGCGGCGGGTATCTGCTTGGAAGAACTGGGATGATCCATCACCAGGGGATTTCAGTTGGGGTATCTCTCTTAAAGGATTTCCTCAAGTGATGATGTGGAAGGGATCAAAGGAGTTTTACCGTGGTGGTCATTGGAATGGTCTTGGATTCAGTGGTGCCCCAGAATTAAAGGCAAATCCAGTTTTTAAGTTCAAGTTTGTTTCCAACGAGGATGAGGTGTACTACACGTACAGCCTCAGGAATGAGTCTATGATTTCAAGGATTGTTATGAACCAATCCATTTCAACTCGTCAAAGGTACATATGGATAGAAGATGCTCGAGCTTGGAGGCTTTATGCATCTGTACCTAGGGATAACTGTGATTCCTACAATATCTGTGGACCAAATGGGAATTGTGTAATTGGTGATTCTCCAGTGTGCCAGTGTTTAAGTGGATTTAAACCAAGATTGCCAGGGCACTGGGACATGATGGACTGGACTCAAGGATGTTTTCTCAATGAAGAATGGAGCTGCGAGGAAAGGAGGAAACATGGGTTTGTTAAATTTAGTCAGCTGAAAGCTCCAGATACTTCAAATTCTTGGGTCAATGAGAGTATGAGTCTCACTGAGTGCAGGGATAAATGCTTGGAGAATTGCAACTGTAAAGCTTATGCAAATCCAGATGTTAGAGGAGCAGGTAGTGGTTGTTTGATGTGGTTTGGTGATCTCAGGGATATCAGAGAGTTTTCAGGCGGTGGTAGGGATTTATACATTAGAACTAAAATTTCAGAATCAGCTGTGAAAGAAAAGCATAGCATGAAGGTGGTGGCAATAATCCTAATAATTGCCTCAGTTCTTGCAACCATTCTGGTTTTGTACACTGTTGGAAAGAGAGTAAAAAGGTTCAGAGTTCGTGAAAGAAATAACTCCTTGATGGTAGAGAATAATGAAGAAGAAGAGGAAGAACTTGAGCTTCCTTTCTTTGATCTAGCTGCAATCGCCAAAGCAACTAATGGCTTCTCAATTAGCAATAAGCTTGGAGAAGGTGGATTTGGGGCCGTATATATGGGTACCCTAGCAGATGGACAAGAAATTGCTGTGAAAAGACTCTCACAAAGTTCTGGACAAGGGTTTAATGAATTTAAGAATGAAGTCATATTGATAGCCAAACTTCAGCATCGGAACCTAGTTAAGCTTGTTGGTTGTTGCATTGAAGGAGAGGAGAAGATGCTTATCTATGAATACATGCCCAACAAAAGCCTAGACTCCTTTATATTTGATCAGGCAAAGGCTAAAATTTTAGATTGGTCTAAACGCTTCAATATTATTTGTGGAGTTGCACGAGGACTTCTGTATCTTCACCAAGATTCTAGGTTGAGAATAATACACAGAGACCTCAAAGCAAGTAATGTCCTACTTGATCATGAGTTCAACCCAAAAATATCTGATTTTGGCATGGCTAGAACTTTCGGGGGAGATCAGATTGAAGGAAATACAAGGAGGGTGGTTGGAACCTATGGTTACATGGCACCTGAATATGCCATTTATGGACTATTCTCAGTGAAATCTGATGTCTTCAGTTTTGGTGTACTAATGCTAGAGATAGTAAGTGGAAAGAAGAACAGAGGTTTTTCCCATTCAAGTAACAGTATCAACCTTATTGGACATGCATGGAGATTTTGGAAAGAAACCAGACCTTTGGACTTAATTGATTCATGCATGGAGAATTCATCTGTTCTATCAGGGGCATTGCGTTGTATCCATATCAGTCTTCTATGTGTCCAACAGCATCCTGAGGATAGGCCAAGCATGTCCACCGTGGTAGTGATGCTGAGCAGTGAGAGTGCCCTGCCTCAACCTAAGGAGCCTGGTTTCCTTATGGAGAAGGAGAAATTTTTTCTTGAAGCAGATTCCTCCACCAAGCACCTCTTTTCTTCTACCAATGATATAAGTCTTACCATGTTAGAGCCTCGGTAG 2457 0.4172 MKNLLLMLVLTSWFFFRTSTADDSIALFQSLPVGKTLVSEEGTFELGFFSAGSAADLYLGIWYKSIPVKTVVWVANRAKPVKGNSSMLHINSEGNLELVNDNGVVVWSANSRKKVQNPIVQLLNSGNLVLRYEGAQDHESYLWESFDYPSDTLLPGMKLGWDLRTGLERRVSAWKNWDDPSPGDFSWGISLKGFPQVMMWKGSKEFYRGGHWNGLGFSGAPELKANPVFKFKFVSNEDEVYYTYSLRNESMISRIVMNQSISTRQRYIWIEDARAWRLYASVPRDNCDSYNICGPNGNCVIGDSPVCQCLSGFKPRLPGHWDMMDWTQGCFLNEEWSCEERRKHGFVKFSQLKAPDTSNSWVNESMSLTECRDKCLENCNCKAYANPDVRGAGSGCLMWFGDLRDIREFSGGGRDLYIRTKISESAVKEKHSMKVVAIILIIASVLATILVLYTVGKRVKRFRVRERNNSLMVENNEEEEEELELPFFDLAAIAKATNGFSISNKLGEGGFGAVYMGTLADGQEIAVKRLSQSSGQGFNEFKNEVILIAKLQHRNLVKLVGCCIEGEEKMLIYEYMPNKSLDSFIFDQAKAKILDWSKRFNIICGVARGLLYLHQDSRLRIIHRDLKASNVLLDHEFNPKISDFGMARTFGGDQIEGNTRRVVGTYGYMAPEYAIYGLFSVKSDVFSFGVLMLEIVSGKKNRGFSHSSNSINLIGHAWRFWKETRPLDLIDSCMENSSVLSGALRCIHISLLCVQQHPEDRPSMSTVVVMLSSESALPQPKEPGFLMEKEKFFLEADSSTKHLFSSTNDISLTMLEPR* 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00887 818 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 762 - -
Lapu5g00887 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 576 779 - -
Lapu5g00887 818 CDD STKc_IRAK 506 771 - -
Lapu5g00887 818 Pfam D-mannose binding lectin 70 175 IPR001480 -
Lapu5g00887 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 18 146 - -
Lapu5g00887 818 PIRSF SRK 1 818 IPR024171 GO:0004674
Lapu5g00887 818 CDD PAN_AP_plant 337 420 - -
Lapu5g00887 818 Gene3D - 17 146 IPR036426 -
Lapu5g00887 818 SMART serkin_6 500 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00887 818 Pfam Protein tyrosine and serine/threonine kinase 502 770 IPR001245 GO:0004672|GO:0006468
Lapu5g00887 818 SMART ntp_6 341 420 IPR003609 -
Lapu5g00887 818 CDD B_lectin 29 149 IPR001480 -
Lapu5g00887 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Lapu5g00887 818 SMART blect_4 28 149 IPR001480 -
Lapu5g00887 818 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 464 575 - -
Lapu5g00887 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 180 IPR036426 -
Lapu5g00887 818 Gene3D Transferase(Phosphotransferase) domain 1 576 782 - -
Lapu5g00887 818 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Lapu5g00887 818 Pfam S-locus glycoprotein domain 207 316 IPR000858 GO:0048544
Lapu5g00887 818 SUPERFAMILY Protein kinase-like (PK-like) 482 771 IPR011009 -
Lapu5g00887 818 Pfam PAN-like domain 338 406 IPR003609 -
Lapu5g00887 818 ProSiteProfiles Protein kinase domain profile. 500 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00887 818 ProSiteProfiles EGF-like domain profile. 283 319 IPR000742 -
Lapu5g00887 818 ProSiteProfiles PAN/Apple domain profile. 338 421 IPR003609 -
Lapu5g00887 818 Gene3D Phosphorylase Kinase; domain 1 473 575 - -
Lapu5g00887 818 ProSiteProfiles Bulb-type lectin domain profile. 22 143 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00887 Lapu-Chr5 13086494 13090029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00887 435 788 Receptor kinase-like Gene Family AT4G23230 55.493 2.92e-132 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu5g00887 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00887 - - cave:132173746 1069.68