Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00883 ATGAAGAACCTTATGTCTTTAATGAGAATCATTTTTCTATGCTATCATATACTTGTCTATCTTTGTGAAATTTCCTTCGCACTTGACTCCATTTCTCAAGACCTGTCCCTAAGTGATGATGTTAATAACAACACCTTGGTTTCGAAAGATGGAACCTTTGAACTTGGATTCTTCACCCCAGGAAATTCCCAGAAACGTTACGTGGGGATTTGGTACAGGAAAATCCCTGTTCAAACTGTGGTTTGGGTTGCAAACAGGCTCAATCCAATCAATGATTCATCTGGCATCTTGAGAATGAACACCAGCACTGGGAACCTTGTCATCACACAGAATGACAAAGTTGTTTGGTCTACAACCTCTTTGGGAAAAGCAGAAAGTCCAGTAGCCCTTCTCTTAGATTCTGGCAATCTTGTGGTAAGAGATGAGAAAGATGCAAACATTGAGGCCTACTTGTGGCAGAGCTTTGACTACCCTACTGACACCTTCTTACCTGAAATGAAGTTTGGTTGGGACCTGAGAACTGGTATCAATAGGAAGCTAACAGCTTGGAAGAGTCCTGATGATCCATCACCTAGTGACTTCTCTTTTGGTATGGTGCTCAACAACTATCCTGAAGCATACATGATGAAGGGTAACCAAAAGTTCTACCGAAGTGGACCATGGAATGGCTTGCATTCAAGTGGTTCACCACATGTTAGGGCCAACCCCATTTATGACTTCAGGTTTGTTTTCAACAAGGATGAAGTTTACTACACATATAGCCTTAAAAACACCTCTGTGATCTCAAGGTTGGTGCTGAATGGAACAAGCTACGTTCGTAGGCGGTATGTGTGGATTGAATCAAAGCACATATGGGAGGTCTACACTTCAGTGCCACTGGACTTATGTGACAGTTATTCCCTTTGTGGAGCAAATGCAAATTGTGTCATATCAGATTCACCTGTGTGCCAGTGTTTGGAAGGTTTCAAGCCTAAGTCCCCTGAAGCATGGAGCTCAATGGATTGGTCTCATGGATGTGTCCGCAATAAGGAATTAAACTGTGAGAACAAGCACAAGGATGGATTTATCAAATTGCCTGAGATGAAAACGCCTGACACCACACATAGTTGGCTAGATCAGACAATTGGGCTAGAGGAATGCAGAGCCAAGTGCTTGGATAACTGTTCTTGTATGGCTTATGCAAATTCAGATATAAGTGGACAAGGAAGTGGTTGCGCCATGTGGTTTGGTGATCTCATTGATATTAGACAGTTTTCTGATGGAGGGCAGGATGTATATGTTCGAATGGATGCTTCAGAATTAGAACACACCAGTGAGGGCCACAAGAAGGGAAGAGTCCTGGTGGCAGTAACAGTTTCTTTGGCCGTGGCAGGAGTTTCTGGAATTCTAATAATACTTGGCTTGTGCTATAGAAAGAAATCACGCACCAATGTGAAAGAGAGATCAGACTTCAGTATCAAATCATATCAAAACAGTGGAATGGAAGTGGATGATATGGACCTACCAGTTTTTGACTTGTCAACTATAGCCAATGCCACTAACAACTTTACAATCAAGAGCAAAATTGGAGAAGGTGGTTTTGGATCTGTATACAGGGGAACTCTAGCAGATGGACTGGAAATTGCTGTGAAGAGGCTTTCGGAAAGCTCAGGACAAGGATTGACTGAATTCAAGAACGAAGTAAAATTGATTGCAAAACTTCAACACCGAAATCTTGTAAAGCTTCTTGGATGTTGCCTTGAAGGAGAGGAAAAAATGTTGGTTTATGAGTACATGATAAATGGTAGCCTGAACTCATTTATTTTTGATCAGGAGAAAAGTAAGTTACTAGACTGGTCAAAGCGCTTCAACATTATATGTGGAATTACCAAGGGCCTTCTCTACCTTCATCAGGATTCCAGACTAAGGATTATTCATAGAGATCTTAAAGCTAGCAATGTTTTACTTGATAATGAGTTGAACCCCAAAATTTCAGATTTTGGCATGGCTAGAATATTTGGTGGAGATCAGAAAGAAGGAAACACTAGGAGAATAGTTGGTACTTATGGCTACATGGCACCAGAATATGCGACTGATGGGCTATTTTCAGTGAAATCTGATGTTTTCAGCTTTGGAGTTTTGTTGATGGAGATTATATCTGGGAAGAGAAGTAGAGGATATTATAATCAGAACCACAGCCAAAATCTCATAGGCCATGCATGGGAACTCTGGAAAAAAGGAAGACCACTAGAACTGGTTGATAAAAGCATAGAAAACTCCATTTTTCAATCACAGATTCTGCATTGCATTCATGTTAGTCTCTTGTGTGTTCAACAGAATCCAGATGATAGGCCTGGAATGTCTCGTGTGCTCTTAATGTTAGTGAGTGAGGTTGAATTGGCTGAGCCAAAACAGCCAGGATTCTTTGGAAAATATTCTAGTGAAGCAGACTCCTCCACAAGTAAGCAGCAACTAAGTTCAACAAACGAAATAACAATTACCTTATTAGAAGCCCGTTGA 2499 0.4102 MKNLMSLMRIIFLCYHILVYLCEISFALDSISQDLSLSDDVNNNTLVSKDGTFELGFFTPGNSQKRYVGIWYRKIPVQTVVWVANRLNPINDSSGILRMNTSTGNLVITQNDKVVWSTTSLGKAESPVALLLDSGNLVVRDEKDANIEAYLWQSFDYPTDTFLPEMKFGWDLRTGINRKLTAWKSPDDPSPSDFSFGMVLNNYPEAYMMKGNQKFYRSGPWNGLHSSGSPHVRANPIYDFRFVFNKDEVYYTYSLKNTSVISRLVLNGTSYVRRRYVWIESKHIWEVYTSVPLDLCDSYSLCGANANCVISDSPVCQCLEGFKPKSPEAWSSMDWSHGCVRNKELNCENKHKDGFIKLPEMKTPDTTHSWLDQTIGLEECRAKCLDNCSCMAYANSDISGQGSGCAMWFGDLIDIRQFSDGGQDVYVRMDASELEHTSEGHKKGRVLVAVTVSLAVAGVSGILIILGLCYRKKSRTNVKERSDFSIKSYQNSGMEVDDMDLPVFDLSTIANATNNFTIKSKIGEGGFGSVYRGTLADGLEIAVKRLSESSGQGLTEFKNEVKLIAKLQHRNLVKLLGCCLEGEEKMLVYEYMINGSLNSFIFDQEKSKLLDWSKRFNIICGITKGLLYLHQDSRLRIIHRDLKASNVLLDNELNPKISDFGMARIFGGDQKEGNTRRIVGTYGYMAPEYATDGLFSVKSDVFSFGVLLMEIISGKRSRGYYNQNHSQNLIGHAWELWKKGRPLELVDKSIENSIFQSQILHCIHVSLLCVQQNPDDRPGMSRVLLMLVSEVELAEPKQPGFFGKYSSEADSSTSKQQLSSTNEITITLLEAR* 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00883 832 CDD STKc_IRAK 522 787 - -
Lapu5g00883 832 ProSiteProfiles Bulb-type lectin domain profile. 32 152 IPR001480 -
Lapu5g00883 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 24 155 - -
Lapu5g00883 832 CDD B_lectin 42 158 IPR001480 -
Lapu5g00883 832 Gene3D Transferase(Phosphotransferase) domain 1 592 798 - -
Lapu5g00883 832 Gene3D - 27 155 IPR036426 -
Lapu5g00883 832 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 777 - -
Lapu5g00883 832 Pfam D-mannose binding lectin 79 184 IPR001480 -
Lapu5g00883 832 PIRSF SRK 1 832 IPR024171 GO:0004674
Lapu5g00883 832 ProSiteProfiles PAN/Apple domain profile. 347 430 IPR003609 -
Lapu5g00883 832 SMART blect_4 37 158 IPR001480 -
Lapu5g00883 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 479 591 - -
Lapu5g00883 832 Pfam S-locus glycoprotein domain 216 326 IPR000858 GO:0048544
Lapu5g00883 832 ProSiteProfiles Protein kinase domain profile. 516 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00883 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 637 649 IPR008271 GO:0004672|GO:0006468
Lapu5g00883 832 ProSiteProfiles EGF-like domain profile. 292 328 IPR000742 -
Lapu5g00883 832 Gene3D Phosphorylase Kinase; domain 1 474 591 - -
Lapu5g00883 832 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 189 IPR036426 -
Lapu5g00883 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 592 795 - -
Lapu5g00883 832 ProSitePatterns Protein kinases ATP-binding region signature. 522 544 IPR017441 GO:0005524
Lapu5g00883 832 SMART serkin_6 516 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00883 832 SMART ntp_6 350 429 IPR003609 -
Lapu5g00883 832 SUPERFAMILY Protein kinase-like (PK-like) 501 801 IPR011009 -
Lapu5g00883 832 Pfam Protein tyrosine and serine/threonine kinase 517 784 IPR001245 GO:0004672|GO:0006468
Lapu5g00883 832 Pfam PAN-like domain 347 415 IPR003609 -
Lapu5g00883 832 Pfam Domain of unknown function (DUF3403) 790 832 IPR021820 GO:0004674
Lapu5g00883 832 CDD PAN_AP_plant 345 428 - -
Lapu5g00883 832 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 346 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00883 Lapu-Chr5 13035730 13039721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00883 446 801 Receptor kinase-like Gene Family AT4G23230 53.501 2.00e-126 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu5g00883 PK_Tyr_Ser-Thr 1.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00883 - - gmx:100778155 1467.98