Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00881 ATGGCAGATGATCAATTTCAGGCAAGTGGGAACTGGTGGGACACAGCAAGGAACGTGAGGTATGAAAGCGGGGCATCACAGTCATCTTCCTCTGCCATCACCAACATAGGCAACTTTGGTTGGCAAGCTTCAGATATGGCAGACATGAAGCCAAGGTCTTCCATGGATTCTTCTTCTGTGGTTTTTCATGACTCACAGAATAAGCTTCAGCCTCCAGATTCTACAAATTCCACTGACCCCAACTTGCACATGATGGGTCTAGGCCTGTCATCCCAAGCCATGGATTGGAATCAAGCATCTTTATTACGAGGAGAGAAGGGTACAGAGAATAGTTTCAGATCGATGTTGCAAGAGAATTTGAGCTCATCAAGAACCAATTTTCAGCAAGAAACTGGGGTGGAGTTGTCTCAACAAGTTCAATGGAGGTCAGAGAAGATGTTCTCTGCTGAGTCTTCAACCAATGAGTTCAAGCAAGTGAGGGACAGCACAGTGACAAGCCAAGGGTTACCCTCTTCCAACTTTCAGATGGATTCCTCAGCCTTATATGGGACCTCTTCAATATTGCAAGGACTCTTGGGACCTGATCACAATAACCAACCCCAACAACAACCTTCTTCCTTTGAGAACCGCTCTATAAGTTTTCCATACCCAACAAGCTATGGTTTAAACTCTAATAATGAGCTGGTCCCTTCTTGGTCCAAAGTTCCTCAATTCTTGAGAGGTTCACCTCCAAAACAACCATCCAATAACCAGTTACATTTCACTAACAACGCACCCTTTTGGAACGCTTCTGAGGCTTCAAACTTCAAAGATGTTCGGTCCAGCTTCTTCCCTTCATTGCAACCCCCCTTCTCTACGCCAAATTTTGAAGTACAGTCCAAGAATATATCCGAAGTTAGAGAGTCTGGTCCTGTGGGAAAGAAAAGTGGGAATGAGCCAGCACCCAAAAGGACCCGTAACGAAACACCATCTCCTATGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTGTCGCCTTTCGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCACGAACAGGTCACTGCCTTAAGTACCCCGTATATGAAAAGTGGAGCTCCAATACAGATTCAACAGAATTCTGGTAAATGTAAGGAAACTGAGTGTCCAAAGCAGGACCTTAGAAGCCGAGGGCTATGCTTGGTGCCTGTTTCAAGCACATTTCCAGTAACTCATGAAACCACAGTGGATTTTTGGACGCCAACATTTGGAGGAGCTTCCAGATAA 1323 0.452 MADDQFQASGNWWDTARNVRYESGASQSSSSAITNIGNFGWQASDMADMKPRSSMDSSSVVFHDSQNKLQPPDSTNSTDPNLHMMGLGLSSQAMDWNQASLLRGEKGTENSFRSMLQENLSSSRTNFQQETGVELSQQVQWRSEKMFSAESSTNEFKQVRDSTVTSQGLPSSNFQMDSSALYGTSSILQGLLGPDHNNQPQQQPSSFENRSISFPYPTSYGLNSNNELVPSWSKVPQFLRGSPPKQPSNNQLHFTNNAPFWNASEASNFKDVRSSFFPSLQPPFSTPNFEVQSKNISEVRESGPVGKKSGNEPAPKRTRNETPSPMPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTALSTPYMKSGAPIQIQQNSGKCKETECPKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGASR* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00881 440 FunFam Transcription factor bHLH123 family 330 392 - -
Lapu5g00881 440 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 320 369 IPR011598 GO:0046983
Lapu5g00881 440 SMART finulus 331 375 IPR011598 GO:0046983
Lapu5g00881 440 CDD bHLH_AtbHLH_like 326 377 IPR045239 -
Lapu5g00881 440 MobiDBLite consensus disorder prediction 51 81 - -
Lapu5g00881 440 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 123 421 - -
Lapu5g00881 440 MobiDBLite consensus disorder prediction 298 327 - -
Lapu5g00881 440 MobiDBLite consensus disorder prediction 48 81 - -
Lapu5g00881 440 MobiDBLite consensus disorder prediction 190 212 - -
Lapu5g00881 440 Gene3D - 330 388 IPR036638 GO:0046983
Lapu5g00881 440 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 330 385 IPR036638 GO:0046983
Lapu5g00881 440 MobiDBLite consensus disorder prediction 151 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00881 Lapu-Chr5 12995689 13000079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00881 103 440 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 46.053 2.46e-73 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00881 - - gmx:100778697 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00881 5 12995689 13000079 Lapu5g00881 5 12995689 13000079 ECH