Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00879 ATGGGAACAAAGGCAAAGAAAGCTATGAAGAAGAACATGAAAAAGGCTTCCTTTAATAAGCCATCTCAGGGCGCTGATTTTTTGCCCTTGGAAGGTGGTCCGGCTCGCAAGCTCGCCGAACAGAAGCCGCCGGAGAATACCGCCACGGTTTTGTACGTGTCAAGGATCCCGCATGGGTTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCGTCAAGAGGTTGAGAATCGCGAGAAATAAAAAGACAGGAAAATCTAGACATTTTGGGTACATTGAATTTGAATCTCCTGAGGTAGCAAAAATTGTAGCTGATACTATGCACAATTATCTCCTTTTTGAGCACCTCCTCCAAGTTTATGTTGTACCTCCGGAGCATGTTCATCCAAGATTATGGAGAGGATTCAATTACCGTTACAAGCCATTGGATTATGTCCAAATTGAACGGAAGCGTCATGACAAGGAAAGAACCTTAGAAGAGCACAACAAATTGGTGGAGAGGATTCTAAAGCATGATAAAAAACGACGGAAAAGGATAGAGGCTGCTGGCATTGATTACGAATGCCCTGAGATTGTGGGTAACATCCAGCCTGCTCCAAAGAAAATAAAGTTTGATGACTGA 630 0.4333 MGTKAKKAMKKNMKKASFNKPSQGADFLPLEGGPARKLAEQKPPENTATVLYVSRIPHGFYEKEMEGYFGQFGTVKRLRIARNKKTGKSRHFGYIEFESPEVAKIVADTMHNYLLFEHLLQVYVVPPEHVHPRLWRGFNYRYKPLDYVQIERKRHDKERTLEEHNKLVERILKHDKKRRKRIEAAGIDYECPEIVGNIQPAPKKIKFDD* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00879 209 Gene3D - 3 124 IPR012677 -
Lapu5g00879 209 SMART rrm1_1 50 123 IPR000504 GO:0003723
Lapu5g00879 209 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Lapu5g00879 209 Coils Coil 147 170 - -
Lapu5g00879 209 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 7 208 - -
Lapu5g00879 209 MobiDBLite consensus disorder prediction 1 41 - -
Lapu5g00879 209 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 118 IPR000504 GO:0003723
Lapu5g00879 209 CDD RRM_NIFK_like 50 122 - -
Lapu5g00879 209 SUPERFAMILY RNA-binding domain, RBD 19 138 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00879 49 122 Eukaryotic Initiation Factors Gene Family AT1G71770 31.081 1.39e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00879 K14838 - gmx:100814276 377.481