Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00874 ATGCGACTTCGAAGTAGCATGGTAAATGGTAGTTTTACATCTCTAACATCTTGGAGAGACACAGAAGATCCTGGTAGAGGTATGTATTCATATCACATAGATACTCGTGGTTTTCCTCAAGTAGTGATTACCAAGGGAGGGACACTGTTGTATAGACCAGGTTCATGGAATGGCAATATTTTATCTGGGATCCCTTCTGAAACATTGTACAAAAACTTTAATTTCTCTTTTGTTATAACTGAGAAGGAAGTTTCTTATGGATATGAACTCCTGAACAAGTCAATTGTTTCGAGATACATGATCACATTAACAGGCCAAATACAACGTTTCGTTTTGTCTGATTTGACAAATAGTTGGCAGCTTTTCTACTCTGGCCCCGGAGACCAGTGTGATAATTATGCCGTTTGTGGTGTGAATTCTAATTGTGATGTAAATAGCTCTCCTACATGTGACTGCCTTCAGGGTTTCATTCCCAGATCTCAAGAAAATTGGAATGCAGAAAACTGGTCTGATGGGTGTGTTAGGAGAGTTAATTTAGATTGTGGCTATAGTGATTTTCTGAAATATCAGGGAATGAAGTTGCCGGACACATCAACTTCATGGTTCGACAGAAGCATGAACATTCAGGAATGTAAGAATTTCTGTCTGAAAAACTGCTCCTGTACAGCATATGCAAATTTAGATATCAGAGATGGTGGAAGTGGATGCTTGCTTTGGTTTAATAACATTGTTGATGTGAGAAAACTAACCAGTGGAGGACAAGATCTTTTCATAAGAGTGGCAGCTTCAGATCTAGGTCATAAAAAGGGCTTAAACAAGAAGCAACTTGCAGGAATTCTTGGAGGTTGTACTGTATTTATATTGGTCATGATATTATTGGGAGTGACCATACTTCGGAGGAAAAAGCTTGAGAAGCCAGGGAACAACCAAAGAATTAGCTGGAAGAATCACACTGATAAGACACAGAAGGAAGACATTGACATTCCAATATTTGATTTTTCAACGATAGCTAATGCAACTAATGATTTCTGCATTACTAACAAATTGGGAGAAGGTGGATTTGGACCAGTGTACAAGGGTACATTGGCAAATGGCCATGATATAGCTGTGAAGCGGCTTTGTAATAATTCAGGACAAGGACCAAAAGAGTTCATAAACGAAGTTGTGCTAATTGCTAATCTTCAGCACCGAAATCTTGTGAAGCTTATTGGGTGTTGCATTCAAAATGATGAGCGGATCTTGATATATGAATTCATGACTAACAGAAGCTTGGACTACTTCATCTTTGATGAAGCTAGAAAAAGTTTGCTGCATTGGGTTCAACGCTTCCAAATTATTTGTGGGATTGCGCGGGGACTTCTCTATCTTCATGAAGATTCTAGACTAAGAATTATCCACAGATCTCAAGACCAGCAATATTCTTTTAGATAA 1431 0.385 MRLRSSMVNGSFTSLTSWRDTEDPGRGMYSYHIDTRGFPQVVITKGGTLLYRPGSWNGNILSGIPSETLYKNFNFSFVITEKEVSYGYELLNKSIVSRYMITLTGQIQRFVLSDLTNSWQLFYSGPGDQCDNYAVCGVNSNCDVNSSPTCDCLQGFIPRSQENWNAENWSDGCVRRVNLDCGYSDFLKYQGMKLPDTSTSWFDRSMNIQECKNFCLKNCSCTAYANLDIRDGGSGCLLWFNNIVDVRKLTSGGQDLFIRVAASDLGHKKGLNKKQLAGILGGCTVFILVMILLGVTILRRKKLEKPGNNQRISWKNHTDKTQKEDIDIPIFDFSTIANATNDFCITNKLGEGGFGPVYKGTLANGHDIAVKRLCNNSGQGPKEFINEVVLIANLQHRNLVKLIGCCIQNDERILIYEFMTNRSLDYFIFDEARKSLLHWVQRFQIICGIARGLLYLHEDSRLRIIHRSQDQQYSFR* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00874 476 Pfam PAN-like domain 182 246 IPR003609 -
Lapu5g00874 476 SMART ntp_6 180 260 IPR003609 -
Lapu5g00874 476 ProSiteProfiles Protein kinase domain profile. 343 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00874 476 SMART tyrkin_6 343 475 IPR020635 GO:0004713|GO:0006468
Lapu5g00874 476 CDD PAN_AP_plant 177 261 - -
Lapu5g00874 476 Pfam S-locus glycoprotein domain 51 159 IPR000858 GO:0048544
Lapu5g00874 476 Gene3D Transferase(Phosphotransferase) domain 1 419 469 - -
Lapu5g00874 476 Gene3D Hepatocyte Growth Factor 180 258 - -
Lapu5g00874 476 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 1 450 - -
Lapu5g00874 476 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 180 260 - -
Lapu5g00874 476 Pfam Protein tyrosine and serine/threonine kinase 345 467 IPR001245 GO:0004672|GO:0006468
Lapu5g00874 476 ProSiteProfiles PAN/Apple domain profile. 181 261 IPR003609 -
Lapu5g00874 476 Gene3D Phosphorylase Kinase; domain 1 316 418 - -
Lapu5g00874 476 SUPERFAMILY Protein kinase-like (PK-like) 326 467 IPR011009 -
Lapu5g00874 476 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 308 418 - -
Lapu5g00874 476 FunFam Os07g0541700 protein 419 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00874 Lapu-Chr5 12658261 12661887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00874 269 467 Receptor kinase-like Gene Family AT4G23190 50.754 3.72e-63 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu5g00874 PK_Tyr_Ser-Thr 2.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00874 - - ccaj:109805721 838.565