Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00864 ATGACCAAGTCCTCTGCAGAAAAGAATGGACTCAAGAAGGGTCCATGGACCCCAGAGGAAGATCAGAAACTCATCGATTACATTCACAAACATGGACATGGCAAATGGCGAACCCTTCCCAAAAATGCAGGACTAAAACGATGTGGAAAGAGTTGTCGGCTTCGCTGGGCTAACTACTTGAGACCCGATATAAAGAGAGGGAGATTCTCATTCGAAGAAGAAGAAGCCATTATCCAGTTACACAGTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAACTTGCCAGGAAGAACAGATAATGAGATCAAGAATTATTGGAACACCCACATCAAGAAAAAACTATTGAAGATGGGGATTGATCCTGTGACTCACACACCACGACTTGATGTTCTACAACTTGCCTCCATTCTCAATACATCTTTATTCAATTCTTCACCCCAATTGAACAACCCTTTTCTTCCTGGGATTGGAAGATCAGTTATAAACCCAAGCCAGCTGCTAAGTTTGCTCTCCACTCTGCTGTCATGTCAGAGCAGAAACAACCCTGATAATGTATTGAATCATAATAATTACCAGCAAAATAATAACCAACTTAGTGGGTGCACTCTATTGCAAAATCAACCCCAATGTTCCCAAATGCAACTTGATAACCTACAAACCTTCCAACCAAACCAACCCCAGGTTTCACTTCAAGGAAACCTTATCGCTAGGTCTAATCCATTGAACATGGAACACCAACTGATGAAAAGTAAATTAGAGCATCAAATCTCTCCAGTTGCTACCTCTCTTAGTCACCAAAACACCCTTCCAAATTTGTGGAACTATAACAATGGAGACAACATATCAGACCTATCAGTTGCTCAATCATCATCAGCTGTGCAGTGTTTCTCTTCACCCAAGTTCAACTCCATATTCAACAATCTCTTGGAAAGTCAGAACCTGTGTAACAACGAAGGGATGCCAAATTTCAATTTAAGTTCACTGCTATCGTCCACACCTTCATCTTCCAGCCCAAGTACTTTGAATTCATCATCTTCCACGACATTTGTCAACGGAAGCGCAGAAGATGAAAGGGACACTTACGGTAGCAACATGTTAATGTATAACATTTCTAATGGCTTGAATGACTCTGGGCTTTTGTGA 1146 0.4127 MTKSSAEKNGLKKGPWTPEEDQKLIDYIHKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGRFSFEEEEAIIQLHSVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLLKMGIDPVTHTPRLDVLQLASILNTSLFNSSPQLNNPFLPGIGRSVINPSQLLSLLSTLLSCQSRNNPDNVLNHNNYQQNNNQLSGCTLLQNQPQCSQMQLDNLQTFQPNQPQVSLQGNLIARSNPLNMEHQLMKSKLEHQISPVATSLSHQNTLPNLWNYNNGDNISDLSVAQSSSAVQCFSSPKFNSIFNNLLESQNLCNNEGMPNFNLSSLLSSTPSSSSPSTLNSSSSTTFVNGSAEDERDTYGSNMLMYNISNGLNDSGLL* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00864 381 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Lapu5g00864 381 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lapu5g00864 381 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Lapu5g00864 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Lapu5g00864 381 FunFam Transcription factor MYB39 68 129 - -
Lapu5g00864 381 CDD SANT 68 111 IPR001005 -
Lapu5g00864 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Lapu5g00864 381 SMART sant 12 62 IPR001005 -
Lapu5g00864 381 SMART sant 65 113 IPR001005 -
Lapu5g00864 381 CDD SANT 15 60 IPR001005 -
Lapu5g00864 381 Gene3D - 10 66 - -
Lapu5g00864 381 Gene3D - 68 115 - -
Lapu5g00864 381 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lapu5g00864 381 FunFam MYB-related transcription factor 12 65 - -
Lapu5g00864 381 MobiDBLite consensus disorder prediction 330 357 - -
Lapu5g00864 381 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lapu5g00864 381 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00864 Lapu-Chr5 11912022 11914217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00864 6 381 MYB Transcription Factor Family AT4G21440 45.918 4.62e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu5g00864 Myb_DNA-binding 8.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00864 K09422 - gmx:100820398 594.734