LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu5g00840	ATGAAGCACTTTGAAATGGCTATTCAACAATATATGGGCATCATAAAGGTTATCTTTTGCATCATTTTGGTTTTTCATGTTTTGGTCGTAGTCAGCAGTGAAGAGAAGAAAACTCAAGAAGAATTCATTAGCCAACTATTTGATCCTACATCTGGACTATTAACTGAGGATACGGCAGAGGTACTATGGATTATATGTTGGGAAGATTTGATTCGGGTAAAGAAAGAAGTAGGTGATTTTGGTTTATGCCTCCCAAAGGAATCATGCAGAAACACCAAAGAAGTTAGTTTAGAAATTGGCTCAGTAGCTAGAGAAAACATACAAAAAATGATTAATGAATGTTATCCTCAATTAAAGGAAAATGTTCTTAACTGTTTTAGAAAAAACAATTTTCCATTCCATGTTCACAAGGAAGAGGATCTCTCCAAGATTTGGCATCCAACATACATGGGATCACCTTCATCTAGAAGATATTTGAGTCAAAATTTTCCCCAACAATTATCTGAAACATCAAACAAGGAACATGAATTACATATAAATATAAAAGATCAAAAGTCTAAGTCTAAATCTTCCCTCTCTGAGGATGATGGTAAAGAAAAGTCTGAGACTAGTATGGCAATACCTATAGTTGTAGCATTTGTAGCTGCAGCATTACTCATTTTATGTTGTTGTCGATTTTGTGGGAGTGGACGAGTTAGCCAAAATGATGAAAGACCCCTTCTCAGCATGAGCATGAATGACTCTTCTATTGGTTCTTCTTCGAATAAAAATATTTCATTCAAAAATTCAATGAAAGAAGAACAAATTGGGATTCACTCATCAAGTATTAAATTGGTTGATGAGAAGAGGAACTCAGTGCATGAAGCTCAATTAGGAGAAGTTGGTAGTGCTTCTATAAGACAATCATTTGAATTAAAACCTCCTCCTGGGAGAGCAGTAGTAAACGGAATGCTTCCTTTGAAACCTCCTCCTGGAAGGCCTGATCTTCTTCCTCCTGAACCAATTAAACCTCCTGATAATCCTATTGTTCCTTCTCCACCTTCTCCTTCTCCTCCTCCACCTCCTCCTCCTCCTCGTGCACCACCAAAGCCTACAAATGTTGGCCCTCCACCTCCTCCACCTCCTAGAAATGGCCCTAGACCACCACCCCCTCCTCCTGGAAATGGCCCTAGACCACCACCCCCTCCTCCTGGAAAAGGCCCTAGAGCTCCACCACCACCACCACCTAGATCCACGGCTCGTCCTGGTGCTGGTCCTAGAGCTCCTCCACCCCCTAGAGGTGTTGGAGGTCCTCCAAGAGCTCCTTCAAAGGTTATCGAGGAAGAAGCCAATTTTGAAGGTGAAGGGTATGCTCCTAAAGCTAAGTTAAAGCCTTTCTTCTGGGATAAGGTTCAAGCTAACTCGGATCAAACAATGGTATGGAATCAACTCAAAGCAGGATCATTCCAGTTTAATGAAGAAATGATGGAGACACTTTTTGGTTATAATGCCATGACTGTGGATAAAGGAAAAGGTCAACCAAAAAAAGAAGTTCTCTCCCAATCAGCTACTCCCCAACTTATACAAATAATTAACTCAAAGAAAGCACAAAATTTATCTATTCTATTAAAAGCATTGAATGTGACTGCAGAAGAAGTTTGTGATGCACTTCTTGAAGGAAATGAGCTCCCCACAGAATTCCTTCAAACCTTGTTGAAGATGGCACCAACGTCGGAGGAAGAACTTAAGCTTAGACTTTTCACTGGAAATCCAACCCAACTCTCCCCTGCAGATAGGTTCCTAAAAGCCATAGTTGACATTCCTTGTTCTTTTAAACGAATGGAAGCACTAATTTACATGGGTACTCTTCAAGAAGATCTCACTAGTACTCGAGATTCCTTTTCAATTTTAGAGGTTGCTTGTAAAACGCTGAGAAGCAGTCGATTATTCCTCAAGCTTCTTGAAGCTGTTCTTAAAACTGGCAATCGTATGAATGATGGGACATTCCGTGGTGGTGCACAAGCATTCAAACTCGATACATTATTAAAATTGTCCGATGTAAAAGGAGTAGATGGCAAGACCACACTCTTGCACTTTGTGGTTCAAGAGATAATGCGCACAGAAGGCATAAGAGCTGCACGCATGGCAAAAGAAAATCACAGTTTCTCCAGCATAAAAACAGAAGACCTTCTTGAGGACATCTCATATGAATCAGATGACCACTATCGTGAACTTGGTCTTCAAGTGGTTTCACGTTTGAGCACTGAACTTGAGAATGTGAAGAAAGCAGCAGCTTTAGATGCTGATGGCTTAGTAGGAACAACTTCAAGATTAGGGCATGGTCTTATAAAAACAAGAGACTTTGTAAACAATGAGCTGAGCAAAGTGAAAGGTGATAAAGGGTTTTATGAGACAGTGAAGAGTTTTGTGGAGAAAGCTGAGGATGATGTCAAAAGTTTGTTAGAAGAGGAAAAGAAAATCATGGGTCTAGTGAAGAACACTGGTGATTACTTTCATGGGGATTCAGGAAAGGATGAAGGGTTGAGATTATTTATAATAGTACGTGATTTCTTAGTAATGTTGGATAAGGTATGCAAGGAGATACAACTTGTTGCACCACCAAAGAAACCAACAGTAAAAAGTGCAAAGCAAGAAACATCTAATCATTCTAGAAAACCTTCTTCCTCTGATACTCTTCCTTCTCCTCATGATTTAATTCGTCAACGAATTTCTCCAGCAATTGCAAATAGGGGGATGGATGACTTTAGTTCAGATGATGAGAGTCCTTAG	2769	0.3991	MKHFEMAIQQYMGIIKVIFCIILVFHVLVVVSSEEKKTQEEFISQLFDPTSGLLTEDTAEVLWIICWEDLIRVKKEVGDFGLCLPKESCRNTKEVSLEIGSVARENIQKMINECYPQLKENVLNCFRKNNFPFHVHKEEDLSKIWHPTYMGSPSSRRYLSQNFPQQLSETSNKEHELHINIKDQKSKSKSSLSEDDGKEKSETSMAIPIVVAFVAAALLILCCCRFCGSGRVSQNDERPLLSMSMNDSSIGSSSNKNISFKNSMKEEQIGIHSSSIKLVDEKRNSVHEAQLGEVGSASIRQSFELKPPPGRAVVNGMLPLKPPPGRPDLLPPEPIKPPDNPIVPSPPSPSPPPPPPPPRAPPKPTNVGPPPPPPPRNGPRPPPPPPGNGPRPPPPPPGKGPRAPPPPPPRSTARPGAGPRAPPPPRGVGGPPRAPSKVIEEEANFEGEGYAPKAKLKPFFWDKVQANSDQTMVWNQLKAGSFQFNEEMMETLFGYNAMTVDKGKGQPKKEVLSQSATPQLIQIINSKKAQNLSILLKALNVTAEEVCDALLEGNELPTEFLQTLLKMAPTSEEELKLRLFTGNPTQLSPADRFLKAIVDIPCSFKRMEALIYMGTLQEDLTSTRDSFSILEVACKTLRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIMRTEGIRAARMAKENHSFSSIKTEDLLEDISYESDDHYRELGLQVVSRLSTELENVKKAAALDADGLVGTTSRLGHGLIKTRDFVNNELSKVKGDKGFYETVKSFVEKAEDDVKSLLEEEKKIMGLVKNTGDYFHGDSGKDEGLRLFIIVRDFLVMLDKVCKEIQLVAPPKKPTVKSAKQETSNHSRKPSSSDTLPSPHDLIRQRISPAIANRGMDDFSSDDESP*	923

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu5g00840	922	PANTHER	FORMIN-RELATED	154	881	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Lapu5g00840	922	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	518	862	-	-
	Lapu5g00840	922	Pfam	Formin Homology 2 Domain	449	854	IPR015425	-
	Lapu5g00840	922	MobiDBLite	consensus disorder prediction	170	199	-	-
	Lapu5g00840	922	SMART	it6_source	446	869	IPR015425	-
	Lapu5g00840	922	PRINTS	Proline rich extensin signature	358	374	-	-
	Lapu5g00840	922	PRINTS	Proline rich extensin signature	337	358	-	-
	Lapu5g00840	922	PRINTS	Proline rich extensin signature	380	397	-	-
	Lapu5g00840	922	PRINTS	Proline rich extensin signature	320	332	-	-
	Lapu5g00840	922	MobiDBLite	consensus disorder prediction	873	895	-	-
	Lapu5g00840	922	MobiDBLite	consensus disorder prediction	171	199	-	-
	Lapu5g00840	922	MobiDBLite	consensus disorder prediction	303	436	-	-
	Lapu5g00840	922	Gene3D	Formin, FH2 domain	451	890	IPR042201	-
	Lapu5g00840	922	MobiDBLite	consensus disorder prediction	868	922	-	-
	Lapu5g00840	922	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	446	880	IPR015425	-
	Lapu5g00840	922	MobiDBLite	consensus disorder prediction	320	431	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu5g00840	Lapu-Chr5	9002073	9007214	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu5g00840	418	913	FH2 protein (formin) Gene Family	AT5G54650	60.765	0.0	578

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu5g00840	-		-	gmx:100792872	779.245