Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00820 ATGATGATGATGATGACAGACAAATTAGGGTTTAGAAGGTTTTGGGGCCGGTTGGGTCGTCGATCATCCTCCAATTCCGACTCATCCTCTACTTCTTCTTCCGATGACTCCAACACCACCCAAAACCAAGACTATAGATACGATGTGTTTATCAGTTTCAGAGGTCCTGACACACGCAACTCTTTCGTTGATCATCTCTACTTTCATCTTCTCCGAAAGGGCATTTTTGTCTTTAAAGATGACCACAGGCTCCGCAAAGGAGAATCCATTTCATCACAGCTTCAACAAGCAATCAGAGGTTCTCGAATTTCTATCATCGTTTTCTCTAAAAGTTACGCCTCCTCAACATGGTGTTTGGACGAAATGGCCGCTGTAGCAGACTGCAAACAACAATCTAACCAAACTGTTTTCCCTGTTTTCTATGATGTTGATCCATCTCACGTAAGACATCAGAATGGGGTATACGAGAATGCTTTTGTTTTACACAGATCAAAATTTAAAGAAGATCCATGCAGGGTCCATCGATGGGAGAAAGCCATGACGGATTTGGCCAATTCAGCTGGTTGGGATGTCGGAAACAAACCAGAATTTGGAGAAATTGAAGATATTGTTCAAGCGGTAATAGAAACACTGGGTCATAAATTCTCTGGGTTTGTTGATGATCTAATTGGGATACAACCACGTGTACAAGCATTAGAAGCTAAATTAAGATTAAGTTCAAACAGTGATGATGCTCAAGTTTTAGGAATTTGGGGAATGGGTGGAATAGGAAAGACGACTCATGCAGCTGTCTTGTATGATAAAATCTCTCACAGATTTGATTCTTGTTGTTTCATTGAGAATGTGAGCAAACTTTATAGGGATGGTGGCCATACTGCTGTACAGAGGCAAATTATTCATCAAACGTTGGATGAAAAAAGTCTAGATATATATAGTCCTATTGAAATATCAGGGATTGTAAGAAATAGGCTACATAAAATAAAGGTTCTTGTAGTTCTTGACAATGTTGATGAATTAGAGCAATTGCAGGAATTGGCAATAAATCCGAAATTGCTTGTCAAAGGAAGTAGAATGATTGTTGTCAGCAGGGATGAGCATATACTAAAAGTGTATGGAGCTGATGTAATACACAAGGTTTCATTATTGAGTGACAAAGATGCTCGTGAATTGTTTTATACAAAAGCCTTCAAAAGTGAAGAGCAAAGCAGTAGTTGTGTGGAGTTGATTCCTGAGGTACTCAAATATGCCCAATGTCTTCCATTGGCAGTTAGAGTGATAGGGTCTTTCTTGTGTACAAGAGATGCTAGTGAATGGAGAGATACTTTGGATAGATTTGAGAACAATCCAGATAATAAAATCATGGATGTACTTCAAATAAGTGTTGATGGGCTACACTATATGGAAAAAGAAATGTTTTTACACATTGCTTGTTTCTTTAAAGAAGAGAGGGAGGATTATGTTAAACGAATTCTGGAGTGTTGTGGATTGCACCCTCACATTGGAATTCCAAGAATGATTGAGAAATCACTCATAACAGTTAGAGATCAACAAATCCATATGCATGATATGTTGCAAGAATTGGGGAAGAAGATTGTTCGCAACCAATTTCCCGAAGAGCCACATGCCTGGAGTAGAATATGGCTTTATGAAGATTTCTTTCATGTGTTGACGACCCAAAAGGGAACAGATGATGTTAAAGCCATAGTTCTAAATAAAATGGAAGCTATTTCCGAGTGTAGCATTGATGGATTGTCAAAAATGAAGAACCTCAGATTACTCATATTATATCATAAAAGCTTTTCAGGAAGCCTTGATTTTCTTTCTCAGAAGCTGCGATATTTTTTGTGGCATGATTATCCTTTTGCTTCTTTGCCATCAAGTTTTGCAGCCTCTGGCCTTGTGGAATTGAACATGCCAAGTAGTAGCATCAACTGCTTATGGGAAGGCCGCAAGAAAGAGATGCTCATATCTGGTTGTTTTAATTCAACGCAGAATTTCCCATGTCTGAAAAGAATGGATTTGAGCAACTCCAAATATCTTACAGAGACTCCTGATTTTACTGGGGTCACAAACCTTGAGCGTCTGGATCTTTCAGGATGCACAGATTTATCATTTGTTCACCCATCAATTGGGTTTCTTCAAAAACTTGCTTTCTTGAGTTTAAGAAATTGCAGCAATCTAATCAGCATCAAATTTGGCAATGGATTTAATCTAAGTTCTCTGAGAGTTCTCCATTTCTCTGGTTGCACTCAACTTGAAAACACGCCAGATTTTACAAGGACAACAAGTCTTGAGTACCTTGACTTTGATGGATGTACAAGTTTATCCTCAGTTCATGAATCAATTGGAGCGCTTGCAAAACTTACATTCTTGAGTTTGAGAGATTGCACAAGCCTTGTTAGTACACCTAACAACAATAATATCATGAAGTCTCTTCAAACTCTAGATTTATCTGGCTGTTTTCAACTTACGGATTTGTCCTTACCACGATCATTCATTTCTTTATCCATGATATCTTTGATTTTTTTGGACATAAGCTTCTGCAATCTTCTTGATGTACCAGATGCCGTTGGAGACTTGTTGTGTTTAGAAAGACTGAATCTTCAGGGAAACAATTTTGTTTCTATACCCCCTTCCATTTCAGGGCTTTATTGTCTAGCCTATTTAAACGTGTCCCATTGCCACAGGCTTCAACATTTGCCTGACCTTCCAGCAAGAAGTACTTCATCAATGGGAAGGTACTTCAAAACAGTATCTGGATCTCGTGATCATAGGTCTGGCATGTATCTTTTTGATTGTCCCAAGATGGTTCATATGTGGACCAAATATTCTGATTGGATGCCCCCACGCAAAGACCTAGAACTTGCATGGCTTGTGAGACTAGCTGAGAATCCATGTTGTTTTCGGTGTGGCTTTGACATTGTTGTTCCTTGGGGTTTGGAACTTCCAAGGTGGTTAAAACAAAGATTTAAAGGAGATTCTGTTATAAGGATAGTGGAATTTAATGAGGGTGACAACTGGATTGGCTTTGTCTTTTGTGTTATATTTGAGAAAAACAAGGGTCCTGTGGTTGCTAGATCTTCATCACATCCATTTTATCTCTCTTTTGAAAGTGAAGACACAGAGGAATACTTTGATATGTCACTGAATTTGGAGTTAGACAAAGTGAATGGATCAAAACATGTTTGGATAATTTACATCTCTCGACAACATTGTCACTTTGTAAAAACAGGAGCACATATCTCATTTAAAGCGCAGCCAAATATTAAGATGAATGCATGGGGGATGATGAGCTTATCCAGGGAAGATGTACAAACGATGCAACAGGGACAACCTCTTCTATTTCTTCCTAATGATAAACAACATGTGAACTTTGATTTTGTAGAAAAAAACAACATCAACTCTGGGGCCAAATTCCAACTTCCTTACAATTGGTTGGTCACAGAAGAAGATGAAGTTGAGAATATTGATGCAAAGACAAAAGAAAACAATTTGTCTTATGCAGGCCTTTAA 3513 0.3834 MMMMMTDKLGFRRFWGRLGRRSSSNSDSSSTSSSDDSNTTQNQDYRYDVFISFRGPDTRNSFVDHLYFHLLRKGIFVFKDDHRLRKGESISSQLQQAIRGSRISIIVFSKSYASSTWCLDEMAAVADCKQQSNQTVFPVFYDVDPSHVRHQNGVYENAFVLHRSKFKEDPCRVHRWEKAMTDLANSAGWDVGNKPEFGEIEDIVQAVIETLGHKFSGFVDDLIGIQPRVQALEAKLRLSSNSDDAQVLGIWGMGGIGKTTHAAVLYDKISHRFDSCCFIENVSKLYRDGGHTAVQRQIIHQTLDEKSLDIYSPIEISGIVRNRLHKIKVLVVLDNVDELEQLQELAINPKLLVKGSRMIVVSRDEHILKVYGADVIHKVSLLSDKDARELFYTKAFKSEEQSSSCVELIPEVLKYAQCLPLAVRVIGSFLCTRDASEWRDTLDRFENNPDNKIMDVLQISVDGLHYMEKEMFLHIACFFKEEREDYVKRILECCGLHPHIGIPRMIEKSLITVRDQQIHMHDMLQELGKKIVRNQFPEEPHAWSRIWLYEDFFHVLTTQKGTDDVKAIVLNKMEAISECSIDGLSKMKNLRLLILYHKSFSGSLDFLSQKLRYFLWHDYPFASLPSSFAASGLVELNMPSSSINCLWEGRKKEMLISGCFNSTQNFPCLKRMDLSNSKYLTETPDFTGVTNLERLDLSGCTDLSFVHPSIGFLQKLAFLSLRNCSNLISIKFGNGFNLSSLRVLHFSGCTQLENTPDFTRTTSLEYLDFDGCTSLSSVHESIGALAKLTFLSLRDCTSLVSTPNNNNIMKSLQTLDLSGCFQLTDLSLPRSFISLSMISLIFLDISFCNLLDVPDAVGDLLCLERLNLQGNNFVSIPPSISGLYCLAYLNVSHCHRLQHLPDLPARSTSSMGRYFKTVSGSRDHRSGMYLFDCPKMVHMWTKYSDWMPPRKDLELAWLVRLAENPCCFRCGFDIVVPWGLELPRWLKQRFKGDSVIRIVEFNEGDNWIGFVFCVIFEKNKGPVVARSSSHPFYLSFESEDTEEYFDMSLNLELDKVNGSKHVWIIYISRQHCHFVKTGAHISFKAQPNIKMNAWGMMSLSREDVQTMQQGQPLLFLPNDKQHVNFDFVEKNNINSGAKFQLPYNWLVTEEDEVENIDAKTKENNLSYAGL* 1171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00820 1170 Pfam TIR domain 47 213 IPR000157 GO:0007165
Lapu5g00820 1170 Pfam NB-ARC domain 237 455 IPR002182 GO:0043531
Lapu5g00820 1170 Gene3D Ribonuclease Inhibitor 809 938 IPR032675 -
Lapu5g00820 1170 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 475 IPR027417 -
Lapu5g00820 1170 PRINTS Disease resistance protein signature 323 337 - -
Lapu5g00820 1170 PRINTS Disease resistance protein signature 807 823 - -
Lapu5g00820 1170 PRINTS Disease resistance protein signature 247 262 - -
Lapu5g00820 1170 PRINTS Disease resistance protein signature 416 430 - -
Lapu5g00820 1170 Gene3D - 219 376 IPR027417 -
Lapu5g00820 1170 Gene3D - 44 217 IPR035897 -
Lapu5g00820 1170 SMART till_3 46 186 IPR000157 GO:0007165
Lapu5g00820 1170 Gene3D - 381 465 IPR042197 -
Lapu5g00820 1170 Gene3D Ribonuclease Inhibitor 567 795 IPR032675 -
Lapu5g00820 1170 SUPERFAMILY Toll/Interleukin receptor TIR domain 38 189 IPR035897 -
Lapu5g00820 1170 SUPERFAMILY L domain-like 576 905 - -
Lapu5g00820 1170 SMART LRR_CC_2 761 788 IPR006553 -
Lapu5g00820 1170 SMART LRR_CC_2 689 711 IPR006553 -
Lapu5g00820 1170 SMART LRR_CC_2 809 834 IPR006553 -
Lapu5g00820 1170 FunFam Disease resistance protein (TIR-NBS-LRR class) 43 213 - -
Lapu5g00820 1170 MobiDBLite consensus disorder prediction 19 40 - -
Lapu5g00820 1170 SUPERFAMILY "Winged helix" DNA-binding domain 451 556 IPR036390 -
Lapu5g00820 1170 ProSiteProfiles TIR domain profile. 45 211 IPR000157 GO:0007165
Lapu5g00820 1170 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 727 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00820 Lapu-Chr5 8452798 8462849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00820 737 906 WRKY Transcription Factor Family AT4G12020 31.250 5.85e-13 72.0