Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00813 ATGGCCTCTATGCCGTTGGGGCCGCAGCAACAGCTTCAACCACCGCAAGTGGCAGCTCCGCCGCAACAACAGCCGCAAGCGGAGAATGACCCTATGAAAGTGGACTCTCGCGGCGGCTCTGACGCCGCCTCCAATAAGGAAATGTCTGCCCCTGTCGCAGAGGGTAACGAAGCACATGCACTCACTGGTCATATAATCTCGACCACAATTGGGGGCAAAAATGGTGAACCTAAACGAACTATTAGTTACATGGCTGAACGTGTTGTTGGCACTGGATCATTTGGAATTGTTTTCCAGGCAAAGTGTTTGGAGACTGGAGAGGCAGTAGCTATAAAGAAGGTCTTGCAGGACAGGCGATACAAAAATCGTGAACTGCAGTTAATGCGCATGATGGATCACCCAAATGTTATTTCCCTGAGGCACTGTTTCTTCTCTACAACAAACAGAGATGAACTTTTTCTGAACTTGGTGATGGAATATGTCCCTGAGACGATCTTCCGAGTTATAAAGCACTACAGTAGTATAAACCAAAGAATTCCCCTAATCTATGTGAAATTATATACATATCAAATCTTTAGGGGACTGGCATATATCCATACTGTACCAGGAGTTTGCCATAGGGATGTGAAGCCTCAAAATCTTTTGGTGGATCCACTCACACATCAAGTCAAGCTTTGTGATTTTGGGAGTGCAAAAGTTCTGGTAAAGGGTGAATCAAACATCTCATACATATGTTCACGGTACTATCGGGCCCCAGAACTAATATTTGGTGCGACAGAGTACACAACTTCTGTTGATATCTGGTCAGCTGGTTGTGTCCTTGCAGAACTTCTTCTAGGCCAGCCTTTGTTCCCGGGAGAAAATCAGGTCGACCAACTTGTTGAAATTATCAAGGTTCTTGGCACTCCTACTCGAGAAGAAATTCGATGCATGAACCCTAATTATACAGATTTCAGATTCCCCCATATCAAAGCTCATCCTTGGCATAAGGTTTTTCACAAGCGAATGCCTCCTGAAGCTATTGACCTTGCATCAAGGCTTCTCCAATATTCACCAAAACTTCGTTACAGCGCAGTGGAAGCATTGGCACATCCTTTCTTTGACGAGCTTCGTGAGCCCAATGCTCGGCTACCTAATGGTCGTTCACTGCCTCCACTTTTTAACTTCAAACAGGAATTAGATGGAGCGCCCCCTGAACTGCTTCCTAAGCTCATCCCAGAGCACGTCAGACGGCAAATGAGTTCCGGCTTGCTGTACTCGTCGGACACCCAAACTCAAATGTAA 1284 0.4595 MASMPLGPQQQLQPPQVAAPPQQQPQAENDPMKVDSRGGSDAASNKEMSAPVAEGNEAHALTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRMMDHPNVISLRHCFFSTTNRDELFLNLVMEYVPETIFRVIKHYSSINQRIPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTTSVDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPHIKAHPWHKVFHKRMPPEAIDLASRLLQYSPKLRYSAVEALAHPFFDELREPNARLPNGRSLPPLFNFKQELDGAPPELLPKLIPEHVRRQMSSGLLYSSDTQTQM* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00813 427 Gene3D Transferase(Phosphotransferase) domain 1 163 410 - -
Lapu5g00813 427 FunFam Glycogen synthase kinase-3 beta 67 162 - -
Lapu5g00813 427 Gene3D Phosphorylase Kinase; domain 1 68 162 - -
Lapu5g00813 427 ProSiteProfiles Protein kinase domain profile. 83 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00813 427 SUPERFAMILY Protein kinase-like (PK-like) 82 390 IPR011009 -
Lapu5g00813 427 CDD STKc_GSK3 78 370 IPR039192 -
Lapu5g00813 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Lapu5g00813 427 FunFam Shaggy-related protein kinase kappa 163 410 - -
Lapu5g00813 427 Pfam Protein kinase domain 83 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00813 427 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 45 412 - -
Lapu5g00813 427 MobiDBLite consensus disorder prediction 1 50 - -
Lapu5g00813 427 SMART serkin_6 83 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00813 427 ProSitePatterns Protein kinases ATP-binding region signature. 89 113 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00813 Lapu-Chr5 8348491 8353601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00813 87 397 MAP Kinase Gene Family AT3G59790 35.890 2.47e-57 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Lapu5g00813 Pkinase 3.4e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00813 K14502 - gmx:100788319 761.525