Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00808 ATGGATGAGAGAATTTGTATATCTGAGGAAGACAAGAGTGAAAGTAGCAAACCCTCTTCTGCAAATCTTAGAAGAAAACGTTCATTCTTCGATTTGAATGAAGAAGCTGCGGATGATGGAGATGGTAGCACCAGTGATGACCCCATCAGTAACAATGACATATCATCTCAAGAGGGTAATTTGAGTAGTAATAATAACTCAAGTGAAGAAGGGAAAGAGCGTGCAACTGCAGTTAGGCAATATGTTCGATCCAAAATGCCAAGACTCCGTTGGACTCCTGATCTTCATTTAGCTTTTGTGCATGCTGTTGAGAGGCTTGGTGGACAAGAAAGAGCAACTCCAAAGTTGGTTCTCCAGTTGATGAATGTGAGAGGACTTAGCATTGCACATGTAAAGAGCCATCTACAGATGTATCGAAGTAAAAAGCTTGATGAGTCTGGCCGAGTTTTATCCCATAATAGGGCAATGCAAGGAAGACATAGCATTTTCGATATGTACGGAAGACTTAATGCCCCACGACACTTTGTGGTTGATAACAGAAATTATGTTCCATCATCTCTGCTCATGGAACAATCACCTTATCAGATCAGTGCTCATGGCTCTTCAAGATTACACCCAGCAGGGTTTTTCAATAGTCACATGATGGTAAGATCAAGTTCAGTGTGGGACAAAGATTTGTGTAATTATCAGTATCAACGTAGTACTTGCAGTCCTAACTTCAGTGGCCACGGGAAGTTTGATGCTGAGGTTGATGATGTGAAAAATCGAATGCCAGAATTCCTGAATCATGTTCAAGTATGGAAACAAGGTCAAATCAAAGATGAATTAGAGAGGTTGAATGAGAAGAAAGGATCTCCAAGTTTCTTGGAGCTGAATTTAAGTCAAGATTCAAGAAACATTAACAGTGGTCAGCAGATGAAGAAAGATCTATCAGAAAGTGAACAAGAAATAAATACCAGACTCTCTCTTTCACTGTTCACTTCCTCGTCCTCAAATTCATCACAACAACCACAATGTAGTGAAAATCATAAAGACGATACCCATGTCGAGAGTTTTTGTTTTCAAAATTATGCACCAAGGAGGCGTTTGGGCTGA 1095 0.4009 MDERICISEEDKSESSKPSSANLRRKRSFFDLNEEAADDGDGSTSDDPISNNDISSQEGNLSSNNNSSEEGKERATAVRQYVRSKMPRLRWTPDLHLAFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGRVLSHNRAMQGRHSIFDMYGRLNAPRHFVVDNRNYVPSSLLMEQSPYQISAHGSSRLHPAGFFNSHMMVRSSSVWDKDLCNYQYQRSTCSPNFSGHGKFDAEVDDVKNRMPEFLNHVQVWKQGQIKDELERLNEKKGSPSFLELNLSQDSRNINSGQQMKKDLSESEQEINTRLSLSLFTSSSSNSSQQPQCSENHKDDTHVESFCFQNYAPRRRLG* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00808 364 MobiDBLite consensus disorder prediction 1 21 - -
Lapu5g00808 364 Pfam Myb-like DNA-binding domain 89 139 IPR001005 -
Lapu5g00808 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 64 309 IPR046955 GO:0003700
Lapu5g00808 364 MobiDBLite consensus disorder prediction 44 71 - -
Lapu5g00808 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 143 IPR017930 -
Lapu5g00808 364 MobiDBLite consensus disorder prediction 326 340 - -
Lapu5g00808 364 MobiDBLite consensus disorder prediction 1 77 - -
Lapu5g00808 364 MobiDBLite consensus disorder prediction 326 345 - -
Lapu5g00808 364 NCBIfam myb-like DNA-binding domain, SHAQKYF class 87 142 IPR006447 GO:0003677
Lapu5g00808 364 Gene3D - 86 143 - -
Lapu5g00808 364 SUPERFAMILY Homeodomain-like 85 141 IPR009057 -
Lapu5g00808 364 FunFam Myb family transcription factor 85 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00808 Lapu-Chr5 8288571 8291669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00808 78 210 G2-like Transcription Factor Family AT2G42660 53.623 4.00e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu5g00808 Myb_DNA-binding 5.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00808 - - vun:114183967 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00808 5 8288571 8291669 Lapu5g00808 5 8288571 8291669 ECH