Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00804 ATGAGGAGTTGGATCGAGAGCAAGTTGAGCCTGGAGCTCTTGAAGGCTGTGGAGAAGGCTGGCTATAAAACCCCTTCTCCGATTCAGATGGCAGCCATTCCCCTTGGCTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGATTGGTTCCGGGAAAACCGTGGCGTTTGTGCTTCCCATGTTGAGCTACATCACCAGGCTTCCTCCCATGAGCAAGGACAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCCCCCACTCGCGAGCTCGCGCAGCAGATCGAGGATGAGACTGTTAAGTTTGTGCAGTATTTGGGCATCAAGGTGGTGTCCATTGTTGGTGGACAATCCATTGAGGAGCAAGGGTTTAAGATCAGGCAGGATATCCTCATAGAGGAGATCCTTGGACGTGGTACTAAGAGGGAGGACTCTACTGTATGGAAGATTTGA 450 0.5222 MRSWIESKLSLELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAEIGSGKTVAFVLPMLSYITRLPPMSKDNEAEGPYAVVMAPTRELAQQIEDETVKFVQYLGIKVVSIVGGQSIEEQGFKIRQDILIEEILGRGTKREDSTVWKI* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00804 149 PANTHER RNA HELICASE 3 131 - -
Lapu5g00804 149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 130 IPR027417 -
Lapu5g00804 149 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 2 30 IPR014014 GO:0003724
Lapu5g00804 149 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 33 131 IPR014001 -
Lapu5g00804 149 Gene3D - 1 132 IPR027417 -
Lapu5g00804 149 Pfam DEAD/DEAH box helicase 27 131 IPR011545 GO:0003676|GO:0005524
Lapu5g00804 149 SMART ultradead3 21 147 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00804 Lapu-Chr5 8208356 8210187 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00804 9 133 Eukaryotic Initiation Factors Gene Family AT5G11200 38.889 1.02e-13 65.5