Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00787 ATGGGCATGAAGAGCACTGGGGGAGAGATTGTTCAAGTCCAAGGAGGGCACATTGTTCGGTCCACGGGTAGAAAAGACAGGCACAGCAAGGTTTACACTGCAAAGGGTCCTCGTGATCGCAGGGTTAGGCTCTCAGCACACACGGCAATTCAGTTCTACGATGTTCAGGACCGTTTAGGGTATGACAGACCAAGCAAGGCCGTGGACTGGCTCATCAAGAAGGCCAAGAATGCCATTGACAAGCTAGCTGAGCTTCCTCCATGGCATCCTACTGCCAACGCTGCAGATGCAGAGAACAACCATAACAATGCAGGGTCTAGTGACATGGCCATTGCAGAACAATCAGAGTCTTCTGGTTACAATTTTCAGCTGCAAAGGCAATTAGGTGAGGACCATGATAACCACCATTCAGCTTTCATTCCTTCACCTATTGACACTGATGCAATAGCCTTCTTTCCCACAACCACTGCCACCTCCTCCATCAATTTCCAAACCTACCCTCCTGACATAATCTCAAGAACCAACAACTCCACTGAGGATCTTGGCCTTTCTCTTCACTCCTTCCAAGACCCTGGCCTGATTCATGGCCAGTCCCAAGCAGGTGCAAACCAAACACAAACACCTTCCAATCACCAAGCCCTCTTTTCTGGCTCAACTCAAGTGGCGTTTGAAGCCAATTACCCCAGGATCGTGTCTTGGAACAATGATGCAGGCACGGATATGAACAGAACCGGGTTCATGGTCAACTCACAAGCACTTCTAGGCCAAGGTGGTTCTGCTGCGTATTCTCAAAGGGGGACCCTTCAGTCCAGTTTCTCACCATCACTTCGTCCTTGGAGTGACATTCCCATGCCTTCTTCCTCCGAACATCACAAGTCACAACCAATTCAACAGGCTTCCATCTTTGGCAGCAGGTTTCTGTGTGATGCATTGCCAGGATTCTGCATTCCTGCAAGAATTCAAGGCGAGGATGAGAGCCATGGTGTTGGTCCCGACAAGCAATCATCTTCTTCTCCTAATTCTCATCACCGAACACAAACAATGAAAACTGATCAAAGTCATTTCCCATGCAAAGCTGCAAATTGA 1086 0.4871 MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELPPWHPTANAADAENNHNNAGSSDMAIAEQSESSGYNFQLQRQLGEDHDNHHSAFIPSPIDTDAIAFFPTTTATSSINFQTYPPDIISRTNNSTEDLGLSLHSFQDPGLIHGQSQAGANQTQTPSNHQALFSGSTQVAFEANYPRIVSWNNDAGTDMNRTGFMVNSQALLGQGGSAAYSQRGTLQSSFSPSLRPWSDIPMPSSSEHHKSQPIQQASIFGSRFLCDALPGFCIPARIQGEDESHGVGPDKQSSSSPNSHHRTQTMKTDQSHFPCKAAN* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00787 361 Pfam TCP family transcription factor 23 125 IPR017887 -
Lapu5g00787 361 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Lapu5g00787 361 MobiDBLite consensus disorder prediction 265 296 - -
Lapu5g00787 361 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 19 317 IPR005333 GO:0003700
Lapu5g00787 361 MobiDBLite consensus disorder prediction 322 361 - -
Lapu5g00787 361 MobiDBLite consensus disorder prediction 331 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00787 Lapu-Chr5 7897417 7900155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00787 8 343 TCP Transcription Factor Family AT3G15030 42.680 3.35e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lapu5g00787 TCP 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00787 - - pvu:PHAVU_005G097200g 637.491