Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu5g00785 | ATGAGTTATTTCGACGACGATCACGACCATAGTCCGTTTGGAACATTCGACAGCCACAACGACTTCAACCGGAGGATACTAATCACCGCCATAGTTTCCCTCTCGGTGGTGCTAGTTTTGGTGTTTGCACTTCACATCTACGCAAGGTTTTTTCTGCGGCGTCAAACTCAGCGCAGAAGCGCCATATACCAACTGAGCCTCAACGTGGCTCACGCGCACACCCAACCACCAAACACCGGACTCGACCCTGCCCTCATCACCGCTCTCCCCACCTTCCCCTTCAAACTCCAGAACGACGCCGTTGAGTGCGCCGTCTGCCTGAGCGTTCTCGAAGACGGAGAACACGTCAGACTTCTTCCTAATTGCAAACATAGCTTCCACGTCGGCTGCATCGACACGTGGCTCGCATCGCACTCCACGTGTCCCCTTTGTCGAACCAAGGCCGAACCGCTCCCTCTTGAACCGGTCCAGCGCGAGGGCCCAACCGGGTTCGCTCTTCCCACCGCCCCAATATTGTTGGAAAACGTGGAAGGCACTTCCGACGGTGCTAATGGGTCACCTAAAATCAACGGCTCCAATTCCAGGTTGAGTTCGTTTCGGAGGATTCTTAGTAGAGAAAGATCGTTGAGAAGAATCCAACCTTCGACGCATGATGATGTTGACCAAGACTTAGAGAGACAGTGA | 684 | 0.5365 | MSYFDDDHDHSPFGTFDSHNDFNRRILITAIVSLSVVLVLVFALHIYARFFLRRQTQRRSAIYQLSLNVAHAHTQPPNTGLDPALITALPTFPFKLQNDAVECAVCLSVLEDGEHVRLLPNCKHSFHVGCIDTWLASHSTCPLCRTKAEPLPLEPVQREGPTGFALPTAPILLENVEGTSDGANGSPKINGSNSRLSSFRRILSRERSLRRIQPSTHDDVDQDLERQ* | 228 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu5g00785 | 227 | CDD | RING-H2_EL5-like | 102 | 145 | - | - | |
Lapu5g00785 | 227 | MobiDBLite | consensus disorder prediction | 208 | 227 | - | - | |
Lapu5g00785 | 227 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 150 | IPR013083 | - | |
Lapu5g00785 | 227 | ProSiteProfiles | Zinc finger RING-type profile. | 103 | 145 | IPR001841 | - | |
Lapu5g00785 | 227 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 20 | 152 | - | - | |
Lapu5g00785 | 227 | FunFam | E3 ubiquitin-protein ligase ATL6 | 69 | 150 | - | - | |
Lapu5g00785 | 227 | SMART | ring_2 | 103 | 144 | IPR001841 | - | |
Lapu5g00785 | 227 | Pfam | Ring finger domain | 102 | 145 | IPR001841 | - | |
Lapu5g00785 | 227 | SUPERFAMILY | RING/U-box | 96 | 149 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu5g00785 | Lapu-Chr5 | 7875515 | 7876198 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu5g00785 | 1 | 227 | C3H Transcription Factor Family | AT2G42360 | 47.131 | 3.74e-58 | 182 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu5g00785 | K19038 | - | gmx:100796057 | 320.472 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lapu5g00785 | 5 | 7875515 | 7876198 | Lapu5g00785 | 5 | 7875515 | 7876198 | ECH |