Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00774 ATGCTAGAAAAGATGGATGATGGAGAAATTTCAAATGCTTTCCCTCTTCAGAACACATCAACTGGGGCATCTAACCAACCTCCTGTTTTGAAGAGGAAGAGAAACCTCCCTGGAAATCCAGATCCTGAAGCTGAAGTCATAGCCTTATCACCGAAGACTCTGATGGCCACAAACAGATTCGTGTGTGAAATTTGTCTCAAGGGTTTCCAAAGGGACCAAAACCTTCAACTCCATCGACGAGGGCACAACCTTCCATGGAAGCTGAAGCAAAGATCAAGCAAAGAAGCAAGGAAGAGAGTTTATGTGTGTCCAGAAAAGACTTGTGTTCATCACCACCCTTCAAGGGCTCTGGGAGACTTAACTGGAATAAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCTCACTCAAAAACATGTGGCACCAGAGAATACAAATGTGACTGTGGCACTATCTTTTCACGGAGGGATAGTTTCATCACTCACAGGGCTTTCTGCGATGCCTTAGCAGAAGAAACAGCTAGGGTGAACGCAGCATCAAGCGTTAGCAACTACAGCGTCATGCAAAATCCCCTGGGTCCTAACATGGCAACCCATTTTTCATCATTTTTCAAGCCAAATTCGTGCCCCGAGGAGCCAGCCCCAGGTAATCAAACATCTAAGGGGCTATCCCTTTGGATGACTCAAACATCTCAGGCTCACCAAACAATAGCTAACAACAATATGCATGAATTTCATCAACTTGGGTCTGCTACAAGCGCAACCTCAATTTATTGTGGTGGTGGTGGAAATCCACTTGCTCCTTGCTCAAATCCACCACCCTCTAATTACCAACTAAATTGGGTTTTTGGTAATAAACTCTCCTCCAATGGAAGCCAAGAGCTAACTAGCACTGCTTCACTTCCACTGGTCAACAACATTGTGAAGGATAACCCCAATCTGCAACTCATAAGTGTTCCTTCATTGTATAGTTCCCAACACCAATCCCATCAAACAGCCTCAGCAAACATGTCAGCCACAGCTTTGCTGCAAAAAGCTGCGCAAATTGGGACAACTTCATCGGACCCATCATTATTCCTTGGGAGCATAGGTTTGAAATGCAACAGTCCAGGCCAAGATGGGAACAAATTTTGTGGTATGTACGGTTCAAGTTCAGTACTCACAAGTCATGAAGCAGAGAATAATTATTCAGGTGATTTGTCACAAATGCCCCCTACAAAACGACGGCACGTACAGAATGAAGAGAGTGCATGGGGACAAACTAGGGATTTTCTTGGAGTTGGTGGTGCCAACCATTTGCCACCCTTCATCAACCAACGGATGGATTTAATTTGA 1389 0.4485 MLEKMDDGEISNAFPLQNTSTGASNQPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRSSKEARKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASSVSNYSVMQNPLGPNMATHFSSFFKPNSCPEEPAPGNQTSKGLSLWMTQTSQAHQTIANNNMHEFHQLGSATSATSIYCGGGGNPLAPCSNPPPSNYQLNWVFGNKLSSNGSQELTSTASLPLVNNIVKDNPNLQLISVPSLYSSQHQSHQTASANMSATALLQKAAQIGTTSSDPSLFLGSIGLKCNSPGQDGNKFCGMYGSSSVLTSHEAENNYSGDLSQMPPTKRRHVQNEESAWGQTRDFLGVGGANHLPPFINQRMDLI* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00774 462 Gene3D Classic Zinc Finger 93 184 - -
Lapu5g00774 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Lapu5g00774 462 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Lapu5g00774 462 FunFam protein indeterminate-domain 12-like 39 107 - -
Lapu5g00774 462 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 446 IPR031140 -
Lapu5g00774 462 MobiDBLite consensus disorder prediction 1 44 - -
Lapu5g00774 462 MobiDBLite consensus disorder prediction 12 28 - -
Lapu5g00774 462 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Lapu5g00774 462 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00774 Lapu-Chr5 7745218 7747962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00774 27 446 IDZ Gene Family AT1G03840 52.677 4.83e-140 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu5g00774 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00774 K25870 - gmx:100778666 832.787