Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00763 ATGGCGTTGTTGTTCAAGGATCCGTCGAAGCTTTCGGCGTATCGAGATAGAAGATTCCCCGGAACGCAAGAGGATTTTGAGCACGCACTTCTGACTTCAACCACCGTTTATGTTGGGAACATGTCGTTTTACACGACGGAGGAGCAAGTTTACGAGCTCTTTTCTCGAGCTGGGGAAATCAAGAAGATCATTATGGGCTTGGACAAGAACACCAAAACGCCCTGTGGCTTTTGTTTCGTTTTATATTATTCTCGTGAAGATACTGAGGATGCTTGCAAATACATAAGTGGGACGATACTAGATGATCGTCTCATTCGTGTTGATTTTGATTGGGGGTTCCAGGATGGAAGACAATGGGGTCGTGGGAGGAGTGGTGGTCAGGTCCGAGACGAGTATCGTACTGATTATGATCCAGGTAGAGGAGGTTATGGGAAGCTGGTTCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGCACTGGTTCTTTGGGTTCTTTTCCACCAGTTATTCCAAGTTCCTATGGTAGACACAGTGGAGGTCACGGTCATGGTCATGGTGGTTCTCATCGGCACGGTAGAGATTACTATAGAAAGAGACACCGAGACGACGATCGCCACACACACGAGTCCTCAAAAAGAACTTCAGATCACGATTCTCGGAGGAACACTGACCATGAATCTAGACCGGAAAAAAATCCACGATTTCGTGAGAGTGGTGATTCTGATGATGACGAGGAAGATGATAGAAAAAGACGGGCTTAA 768 0.4609 MALLFKDPSKLSAYRDRRFPGTQEDFEHALLTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRLIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGTGSLGSFPPVIPSSYGRHSGGHGHGHGGSHRHGRDYYRKRHRDDDRHTHESSKRTSDHDSRRNTDHESRPEKNPRFRESGDSDDDEEDDRKRRA* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00763 255 CDD RRM_NCBP2 36 113 IPR034148 -
Lapu5g00763 255 MobiDBLite consensus disorder prediction 199 255 - -
Lapu5g00763 255 SUPERFAMILY RNA-binding domain, RBD 24 144 IPR035979 GO:0003676
Lapu5g00763 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Lapu5g00763 255 Gene3D - 5 150 IPR012677 -
Lapu5g00763 255 MobiDBLite consensus disorder prediction 163 255 - -
Lapu5g00763 255 MobiDBLite consensus disorder prediction 124 138 - -
Lapu5g00763 255 MobiDBLite consensus disorder prediction 184 198 - -
Lapu5g00763 255 MobiDBLite consensus disorder prediction 120 141 - -
Lapu5g00763 255 SMART rrm1_1 35 108 IPR000504 GO:0003723
Lapu5g00763 255 FunFam Nuclear cap-binding protein subunit 2 4 150 - -
Lapu5g00763 255 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 253 IPR027157 GO:0000339|GO:0005846|GO:0045292
Lapu5g00763 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00763 Lapu-Chr5 7612614 7616836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00763 35 109 Eukaryotic Initiation Factors Gene Family AT3G11400 33.333 8.41e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00763 K12883 - gmx:100776217 402.134