Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00757 ATGAGCAGTGTCTGTGCCGAGCAGCACGAGTTTCACCCCTCTCACCAATTCCTCTCTCCAAAGAAAACCCTAAGAGAGATTGACATCCCTCCAAGGAAGCTTCTCACTCGCCGCGCCGCCGCTGCATGCGGTGGCTCCGACTTGTTCTCAGACGACACCATGCTGCAAAAGTTCCTCCCTTCCAACAACCTTGATGACTCCGATGAGGATGACCCTTACTCCTCCGACCACTTCCGGATGTTTGAGTTCAAGGTCCGCCGGTGTACTCGCAGCCGGAGTCACGACTGGACTGACTGCCCTTTTGCTCACCCCGGCGAAAAGGCTCGCCGTCGTGACCCTCGGAGGTATCACTACTCAGGAACTGTATGTCCTGATTATCGCCGTGGAGGGTGCAATCGTGGTGATGCATGTGAATACGCTCATGGCGTATTTGAATGCTGGCTGCACCCTGCCAGATACAGGACTGAGGCCTGTAAGGATGGAAAGAACTGCAAGAGGAAGGTTTGTTTCTTTGCACACACACCTCGCCAGCTGAGAATTTTACCGGTAACTTCTCCTTCTTCTGATGATATGTCATGCAAGAAGAACACTAACAAGCTCTTCAACCATGCTTCAAGATCCAACAACAACAACTGTTGCTTGTTTTGCCATTGTGTTTCTTCTTCTTCTTCTTCCACCGCTTCTCCAACCTCAACTCTCTTCAACATGTCGCATTACTCGCCACCGCTATCACCATCGTCCTCCTCCTCACCGCCTCCTTCTCCGTTGAAGCCCAGAAACGGGGTTTCTGTTTCTCCAATCTCCCGTTATGGTGGTGTGAATGTAAAGCCTCATCACGGGGTGGTGAGTTACAAAGAAGCGTTCGCTGAATTTGTTAACTCCTTGGAGGGTTTGAGTTTGAACGAGGGTTCTCCTGTTTCTGGTGCCAAACCATTAAACTTGCCTTGGCTTGATGTTTCTCTGAACTGTGAGGAACAGCAGCAGCAACCACTACCGTTCATTGCTTCTTCTTTTGGCTGCGAAGATCAGCAGCCTTTTATTATTTCACCAGGGTCCACTCAGACACCGACAAGTGTTAAGTTTTGCAGCAACAGATTCATAGGCAACGACAACAAGGTTGTCGGTGCTGATTCAAATGTCCCAGATCTCGCGTGGGTGAATGAGTTGCTGATGTAG 1176 0.5017 MSSVCAEQHEFHPSHQFLSPKKTLREIDIPPRKLLTRRAAAACGGSDLFSDDTMLQKFLPSNNLDDSDEDDPYSSDHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPDYRRGGCNRGDACEYAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVTSPSSDDMSCKKNTNKLFNHASRSNNNNCCLFCHCVSSSSSSTASPTSTLFNMSHYSPPLSPSSSSSPPPSPLKPRNGVSVSPISRYGGVNVKPHHGVVSYKEAFAEFVNSLEGLSLNEGSPVSGAKPLNLPWLDVSLNCEEQQQQPLPFIASSFGCEDQQPFIISPGSTQTPTSVKFCSNRFIGNDNKVVGADSNVPDLAWVNELLM* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00757 391 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
Lapu5g00757 391 MobiDBLite consensus disorder prediction 241 263 - -
Lapu5g00757 391 Gene3D - 117 181 - -
Lapu5g00757 391 SUPERFAMILY CCCH zinc finger 116 146 IPR036855 GO:0046872
Lapu5g00757 391 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Lapu5g00757 391 PANTHER UNKEMPT FAMILY MEMBER 51 390 IPR045234 -
Lapu5g00757 391 MobiDBLite consensus disorder prediction 245 259 - -
Lapu5g00757 391 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Lapu5g00757 391 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Lapu5g00757 391 FunFam Zinc finger CCCH domain-containing protein 66 75 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00757 Lapu-Chr5 7546372 7547760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00757 73 181 C2H2 Transcription Factor Family AT5G12850 67.890 3.60e-53 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu5g00757 zf-CCCH 4.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00757 K23047 - gmx:100787049 612.068