Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu5g00756 | ATGCCTGCCCAGAAGCGCTCCCTCCCTGACTCTCTTGACGAAGGGGACACTTCGCATCTCAACCTCTTCCATTCTCGACATTCGAAGCACCAACAGCAACAACATCAGGACCGGTCGCCCGAATACGACGAGGATCACCACCATGAAGTGGAGGAACAAGAGGAAGAAGAAGAAGAAGGGGAAGGAGAAGAAGAAGAAGACGACGATGAGGAAGAAGAAGAAGAAGACGAAGAAGTAGAAGAAGCGGCGCATGATAACGACGGCAAAGAAACGCCACAGGATTCCGACGAAACCCCATCTTCTGGCTCTGAAGAAAAACCTGAATTCGTGTATGTAGAACTTCTGGAAATACGTAAAGATGTCCAGTGTCCAATTTGCCTTGGCATTATCAAGAAGACAAGAACTGTCATGGAATGCTTGCACCGTTTTTGCAGGGAATGCATTGACAAATCGATGCGACTGGGGAATAATGAATGTCCAGCCTGCCGCACACATTGTGCCAGTCGCCGTTCCTTGAGAGATGATCCAAATTATGATGCCCTTATTGCTGCTTTATATCCAGATATTGAGAAGTACGAAGAAGAGGAGCTTGAATTTCGTGAAGAAGAGAAGAACCGCAATAAGCAGATTCAAGCTTCCATAGCAAAAGTAGTTCAACGGCAATCTGAAGCCCTTGTTAAGAGACGTAAAGATACACCAGGAGTATTTCTAACAAGATCACAGCGTAATCAGCGAAACATTCATTCTAGGAGACAAGCCCAAGCAATTGAAGGATCGGAAGATAATGAGGAGGAAAATGACAATAATGAAAAGGATTCATCTTCAGCTGATGAACGAAGTACAGAACACAGGCAGAAAAGGCGAAAGAGATGGGCTAGAGTTCGCCCCTCTCAACCATCATCATCCATGGCAAGTCCAGATGGAGGCAATGACAGTGATATAAGTAGAGAAAATCGTGGAATTTCAAGGCAGGTGTCAAAACCTAGAAAGCTAACTTGGGGAAGGGGTGGTTTTAGAAGCCACACGCGACATGGCAGTGGTGGTGGTAGTAACAGCAAAAGTTCTCGCAGTAGTCGATTGTCTAAGTTTGTTGACCATCTCCGAAGCTTGGATGAAAACACAAATGAGTTTGATGTCCGTCTCATGCTTGTTTCTCTTGATCATCAAAGTACACCAAGTTTGCCGCAGCCTTACCTTTGCTGTCGACCAACTTTGTCTGTGGGGCACCTTTGCGAATATGTTGCTCGTCAGACACCTTTTCCGGTTGAAGGAATCGAGATACTGGCAGTCAAAGGATGTCATAGTACAAATCGTGACAAGTCAGCTGATGAGAATTCAGCCCTGCTATATGATGAGCTATCAACGCTGGTTATAGATCCACACAAAGATGAACTGGAAGTTTTACAAGAACATGAGACTCTAGCAGGGCTTAGATCCAAATGCATATCTAAGATGGGGCATTTGATACTTGCATACAGGCGGAAGGAAGTATCATAA | 1497 | 0.4509 | MPAQKRSLPDSLDEGDTSHLNLFHSRHSKHQQQQHQDRSPEYDEDHHHEVEEQEEEEEEGEGEEEEDDDEEEEEEDEEVEEAAHDNDGKETPQDSDETPSSGSEEKPEFVYVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRKDTPGVFLTRSQRNQRNIHSRRQAQAIEGSEDNEEENDNNEKDSSSADERSTEHRQKRRKRWARVRPSQPSSSMASPDGGNDSDISRENRGISRQVSKPRKLTWGRGGFRSHTRHGSGGGSNSKSSRSSRLSKFVDHLRSLDENTNEFDVRLMLVSLDHQSTPSLPQPYLCCRPTLSVGHLCEYVARQTPFPVEGIEILAVKGCHSTNRDKSADENSALLYDELSTLVIDPHKDELEVLQEHETLAGLRSKCISKMGHLILAYRRKEVS* | 499 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu5g00756 | 498 | MobiDBLite | consensus disorder prediction | 220 | 358 | - | - | |
| Lapu5g00756 | 498 | MobiDBLite | consensus disorder prediction | 1 | 106 | - | - | |
| Lapu5g00756 | 498 | MobiDBLite | consensus disorder prediction | 9 | 23 | - | - | |
| Lapu5g00756 | 498 | ProSiteProfiles | Zinc finger RING-type profile. | 123 | 163 | IPR001841 | - | |
| Lapu5g00756 | 498 | MobiDBLite | consensus disorder prediction | 30 | 47 | - | - | |
| Lapu5g00756 | 498 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 117 | 186 | IPR013083 | - | |
| Lapu5g00756 | 498 | MobiDBLite | consensus disorder prediction | 344 | 358 | - | - | |
| Lapu5g00756 | 498 | Coils | Coil | 189 | 220 | - | - | |
| Lapu5g00756 | 498 | MobiDBLite | consensus disorder prediction | 48 | 83 | - | - | |
| Lapu5g00756 | 498 | CDD | RING-HC_RING1-like | 120 | 185 | - | - | |
| Lapu5g00756 | 498 | Pfam | Zinc finger, C3HC4 type (RING finger) | 122 | 162 | - | - | |
| Lapu5g00756 | 498 | SUPERFAMILY | RING/U-box | 109 | 177 | - | - | |
| Lapu5g00756 | 498 | MobiDBLite | consensus disorder prediction | 84 | 106 | - | - | |
| Lapu5g00756 | 498 | Coils | Coil | 50 | 75 | - | - | |
| Lapu5g00756 | 498 | MobiDBLite | consensus disorder prediction | 295 | 311 | - | - | |
| Lapu5g00756 | 498 | ProSitePatterns | Zinc finger RING-type signature. | 139 | 148 | IPR017907 | - | |
| Lapu5g00756 | 498 | PANTHER | OS11G0578200 PROTEIN | 34 | 496 | IPR044592 | - | |
| Lapu5g00756 | 498 | SMART | ring_2 | 123 | 162 | IPR001841 | - | |
| Lapu5g00756 | 498 | MobiDBLite | consensus disorder prediction | 236 | 253 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu5g00756 | Lapu-Chr5 | 7526347 | 7539264 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu5g00756 | 116 | 186 | C3H Transcription Factor Family | AT3G23060 | 35.135 | 3.02e-07 | 50.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu5g00756 | K10695 | - | gmx:100776547 | 707.212 |