Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00755 ATGCTGTGTTGTCAAGCGGAGAAGTGCAACGCGGATCTGCATGAAGCCAAGCAATACCACAGGAGGCACAAGGTGTGCGAGTGTCATGCCAAGGCTCAGGATGTGCTTGTTCATGGCATCAAACAACGGTTCTGTCAGCAATGTAGCAGGTTTGGGAGATTCCACGAGTTGTCTGAATTTGATGACACAAAAAGAAGTTGTCGCAGGCGTTTGGCTGTACACAATGAACGGAGGAGAAAGAACTCTGATCAATCTCAAGCAGAAGGGTCAAGCCACAAAGGGACAGAGGCCCCTCAATTTAAGGACATTGCTTGTGGTCAGGCTAATGAAAGGGGAAGAACTCTTATAACGATAAAGGAAAATTCTGCTTACAAAAATTTCCAAATAAGATAA 393 0.4529 MLCCQAEKCNADLHEAKQYHRRHKVCECHAKAQDVLVHGIKQRFCQQCSRFGRFHELSEFDDTKRSCRRRLAVHNERRRKNSDQSQAEGSSHKGTEAPQFKDIACGQANERGRTLITIKENSAYKNFQIR* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00755 130 Gene3D - 1 68 IPR036893 GO:0003677|GO:0005634
Lapu5g00755 130 Pfam SBP domain 4 80 IPR004333 GO:0003677
Lapu5g00755 130 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 3 90 IPR044817 GO:0003677
Lapu5g00755 130 ProSiteProfiles Zinc finger SBP-type profile. 1 81 IPR004333 GO:0003677
Lapu5g00755 130 MobiDBLite consensus disorder prediction 72 103 - -
Lapu5g00755 130 SUPERFAMILY SBT domain 2 84 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00755 Lapu-Chr5 7517867 7519369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00755 4 130 SBP-box Gene Family AT3G15270 53.906 3.65e-37 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lapu5g00755 SBP 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00755 - - vum:124838879 246.899