Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00747 ATGGATCAACAACAGCCAGAGAGAAACCAAGCTTCTCCAGCCAAAGTAGAAAGAAAGATCGCAGAGAGAGACAGGAGAAGCAAGATGAAGAACCTCTATTCCCAACTCAACTCTCTTCTCCCTTCCCATAATCCCAAGGAAGCCATGCCACTGCGTGCTCAAATAGGTGAAGCAATGAAGTACATTAAAAGCCTAGAGGCAAAAGTGAAGATGGCGCAGGAGAAGAAAGAAAGGTTACTGGAAAGGAAGAGAACTCTTAGTGGCTGCAGCTCCAGTTCTTCTGAAGCTCAAGGAAACCTAAAACCACCAAAAATCGAGATTCATGAAACGGGATCTGCACTTGAAGTCATTCTGATTTGTGGGGTTGATAACAACTTCATTTTCTGTGAAATTATTCGAATACTGAATGAAGAAAACGTCGAGGTCATCAGTGCCAGTTCTTCCATGGTTGGAGATTCAGTGATGCATGTTGTGCACGGCAAGGTTGGGCAATCTATGCTTCGATTTGAAGGGAGCAAAGTGAGTGAGAAGCTGAAATGGATTGTGAATGGATCCTTCAGTGATGAGGAAATAGAGCCTCAATTGTGGGATTCTGGAATTTATACTACTGACGACACCTGGGTGCTTCAAGATCCAACCCTAGACTTTGGTTTACCACCGTATCCCTGGTAA 672 0.4405 MDQQQPERNQASPAKVERKIAERDRRSKMKNLYSQLNSLLPSHNPKEAMPLRAQIGEAMKYIKSLEAKVKMAQEKKERLLERKRTLSGCSSSSSEAQGNLKPPKIEIHETGSALEVILICGVDNNFIFCEIIRILNEENVEVISASSSMVGDSVMHVVHGKVGQSMLRFEGSKVSEKLKWIVNGSFSDEEIEPQLWDSGIYTTDDTWVLQDPTLDFGLPPYPW* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00747 223 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 179 - -
Lapu5g00747 223 MobiDBLite consensus disorder prediction 1 26 - -
Lapu5g00747 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 13 65 IPR011598 GO:0046983
Lapu5g00747 223 MobiDBLite consensus disorder prediction 80 103 - -
Lapu5g00747 223 Gene3D - 12 91 IPR036638 GO:0046983
Lapu5g00747 223 Pfam Helix-loop-helix DNA-binding domain 15 66 IPR011598 GO:0046983
Lapu5g00747 223 SMART finulus 19 71 IPR011598 GO:0046983
Lapu5g00747 223 MobiDBLite consensus disorder prediction 85 99 - -
Lapu5g00747 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 91 IPR036638 GO:0046983
Lapu5g00747 223 Coils Coil 55 82 - -
Lapu5g00747 223 MobiDBLite consensus disorder prediction 12 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00747 Lapu-Chr5 7371670 7372937 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00747 9 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 39.130 4.27e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu5g00747 HLH 5.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00747 - - var:108332856 317.39