Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00743 ATGGCTGATCATCAGCAGCAGGGAGATCAACCGCTTTCAACAAAAGTAATCGAGAGAAGGATTGTAGAAAAAAACCGGAGAAACCATATGAAGAATCTCTGTTCCCAGCTTAACTCTCTTCTCCCTAACAACAATAATCCCAGGGTAGAAGCAGTATCACGTGTTGATCAAATAGACGAGGCTATCAACTACATCCAGAGCCTAGAGACAAAGGTGAAGATGGCGCAGAAGCAGAGAGAAAGTTTAAGGGAAAGGAAGAGACCTCGTGGTGGCTGTTCTAGTTCTTCTGAAGCAACAAAAGTTGAAGTTCATGAAATGGGTTCCTTGCTACGTATCACTCTGGTGTGTGGCTTTCACAACCAGTTCATTTTGAGGGAAATTATTCGCATACTGCATGAAGACAACATAGAGGTCAAGACTGTTCATTCTTCACTCACATCTCGAGACACATTTCTACATGTTGTGAACGCAGAAACTCATCAGCAATCCTTTAATTTAGGAACAACCGTAATGGTTGAGAGACTGAAAAGATTTGTGAACGGGCATGGGGGAGACTGA 558 0.4283 MADHQQQGDQPLSTKVIERRIVEKNRRNHMKNLCSQLNSLLPNNNNPRVEAVSRVDQIDEAINYIQSLETKVKMAQKQRESLRERKRPRGGCSSSSEATKVEVHEMGSLLRITLVCGFHNQFILREIIRILHEDNIEVKTVHSSLTSRDTFLHVVNAETHQQSFNLGTTVMVERLKRFVNGHGGD* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00743 185 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 68 IPR011598 GO:0046983
Lapu5g00743 185 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 13 179 - -
Lapu5g00743 185 Coils Coil 58 85 - -
Lapu5g00743 185 SMART finulus 20 74 IPR011598 GO:0046983
Lapu5g00743 185 Pfam Helix-loop-helix DNA-binding domain 19 69 IPR011598 GO:0046983
Lapu5g00743 185 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 87 IPR036638 GO:0046983
Lapu5g00743 185 MobiDBLite consensus disorder prediction 76 98 - -
Lapu5g00743 185 Gene3D - 16 90 IPR036638 GO:0046983
Lapu5g00743 185 MobiDBLite consensus disorder prediction 76 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00743 Lapu-Chr5 7306896 7307958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00743 14 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 30.159 3.51e-18 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu5g00743 HLH 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00743 - - var:108332857 212.616