Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00739 ATGGGGTGCATATCTTCCAAGAGTGCAGCTGTTGATGATAGCAGGGAGGGTGTGGCAAGGGAATTGACTTCATCTAGCAAAAGGGCTTCGGAGATGAAGGTTTCTACATTGGGTTCCAAGAAAAGGGTCGATGGAGTTTGGGGGAAAGATAAGGTTTTAGAAGGTGCTGATATGAAAGAGTCATTAATTGGGAAGGAATCTGATGATTCGATGCGGTTGTTTGATTATCAGAATGGGAAGAAGAAAAAGGAGAAACCTGAATCGGCTGTTCTTGATCATCCTGGTCTTGGGAGGGTTCCGAAAGGTTTAGAAGGAGAGCAAGTTGCAGCAGGTTGGCCAACTTGGCTTTCTTCTGTTGCCGGTGAAGCTATCCACGGGTGGATACCACGGAGTGCAGATACTTTTGAGAGGTTTGGTAAAATTGGCCAAGGAACCTACAGTTCTGTGTATAAGGCACGTGATTTGACTCACCAAAAGATCGTTGCGTTGAAGAGGGTACGCTTTGATAATTTTGATGCTGAGAGTGTCAAGTTTATGGCAAGGGAAATCCTTGTTCTGCGTAGGCTTGACCATCCAAATATAATAAAGTTGGAAGGATTGATAACATCGCAGACATCTCGCAGCTTGTACCTTGTTTTTGAATATATGGAACATGATCTTACAGGACTTTCATCAAGTCCTAGCATTAAGTTTTCCGAACCACAGGTTAAATGCTACATGCAGCAGCTTCTTAGTGGATTGAATCATTGTCATAGTCGAGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAACAATGGCACCTTAAAGATTGCAGATTTTGGTCTGGCAAATTTTATTGACCCCCATCACAAGGTTCAATTGACCAGTCGTGTAGTAACTCTGTGGTATAGACCACCAGAACTCTTACTTGGAGCATCTAATTACGGAGTTGCAGTAGATTTGTGGAGCACTGGTTGCATACTGGGGGAATTATATTGTGGCAGGCCTATTTTGCCTGGAAAAACAGAGGTTGAGCAATTGCATAGGATTTTTAAACTTTGTGGTTCACCATCTGAGGATTATTGGCGTAAGCTGCGGTCACCACATCCAACAGTATTCAGGCCTCCCCACCATTATAGGCGTTGTGTTGCTGAAACATTTAAAGAATATCCATCTGCTGCCACAAAGCTAATCGAATCCCTACTTGCTTTAGATCCCACACTTCGAGGAACAGCGGCTACAGCCCTAAAGAGTGAGTTCTTTTCAACGGAACCCCTTCCTTGTGATCCATCAAGTTTACCAAAATATCCTCCTTGCAAAGAGATTGACAGTAAATTGTGGCAAGAAGCAACAAGGCAAGGAGCTGATGGGAGAAAGGAGAAGAAAAATGGACCAAGGGTTCGACAAGAGAAAGAACCCCAGACATTTATTTTATCCAAAGACAATGTGGACTCTGGCATTTCAATGCAGCAAGGGCAACGTCTTCCAAACTCTAGGAGCCGGAACGAATTCTTCAACCCTCACAGAGAACCTGTTTCTGGACATTTGGTTTTTCCACAGAAATTGTCAGAGGATCATAAAGCAACGGTAAATTATTTCTCCGGGCCTCTTTATCAGAGGCCTATGCATTCAGGTCCTTTGGTTCCAGGCAATGGCTGGGAAATGGCTGGAAAGGAAGCTGGTGAGCAGGCTCATGTTTCAAACAAAGTCAACCTACCAAAGCTATCTGGAGTGGCATCTAGGACTTCTTCAAGGCCCCGAGAAGCAATTCAAGCACAAAGATCTTTGGAGTCAACTAATGTTGGATCAGAGTCAAGAAGAAGGCATGATAAAAAACGCCATTCTCAGAGAATTGATCACAGGCAAATCGAAAACGGGAAAGTCTCAACTCAAACATTAATTCTGGAGGCGCATGGACCCATGGGAAACAATATCTGCCACCTCTCTGGTCCATTACTGGTTTCATCAAACAATATGGATCAGATGCTGAAAGAGCGTGATCGAAAGATCCAAGAATATTCGAGACGAGCACGAATGTACAAGTCAGGTGAGATAGTTCGTGCAAACCAAAATTAG 2070 0.4382 MGCISSKSAAVDDSREGVARELTSSSKRASEMKVSTLGSKKRVDGVWGKDKVLEGADMKESLIGKESDDSMRLFDYQNGKKKKEKPESAVLDHPGLGRVPKGLEGEQVAAGWPTWLSSVAGEAIHGWIPRSADTFERFGKIGQGTYSSVYKARDLTHQKIVALKRVRFDNFDAESVKFMAREILVLRRLDHPNIIKLEGLITSQTSRSLYLVFEYMEHDLTGLSSSPSIKFSEPQVKCYMQQLLSGLNHCHSRGVLHRDIKGSNLLIDNNGTLKIADFGLANFIDPHHKVQLTSRVVTLWYRPPELLLGASNYGVAVDLWSTGCILGELYCGRPILPGKTEVEQLHRIFKLCGSPSEDYWRKLRSPHPTVFRPPHHYRRCVAETFKEYPSAATKLIESLLALDPTLRGTAATALKSEFFSTEPLPCDPSSLPKYPPCKEIDSKLWQEATRQGADGRKEKKNGPRVRQEKEPQTFILSKDNVDSGISMQQGQRLPNSRSRNEFFNPHREPVSGHLVFPQKLSEDHKATVNYFSGPLYQRPMHSGPLVPGNGWEMAGKEAGEQAHVSNKVNLPKLSGVASRTSSRPREAIQAQRSLESTNVGSESRRRHDKKRHSQRIDHRQIENGKVSTQTLILEAHGPMGNNICHLSGPLLVSSNNMDQMLKERDRKIQEYSRRARMYKSGEIVRANQN* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00739 689 SMART serkin_6 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00739 689 MobiDBLite consensus disorder prediction 557 622 - -
Lapu5g00739 689 ProSiteProfiles Protein kinase domain profile. 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00739 689 CDD STKc_CDK9_like 135 419 - -
Lapu5g00739 689 MobiDBLite consensus disorder prediction 1 36 - -
Lapu5g00739 689 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Lapu5g00739 689 MobiDBLite consensus disorder prediction 448 472 - -
Lapu5g00739 689 FunFam probable serine/threonine-protein kinase At1g54610 122 217 - -
Lapu5g00739 689 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Lapu5g00739 689 SUPERFAMILY Protein kinase-like (PK-like) 128 427 IPR011009 -
Lapu5g00739 689 Gene3D Transferase(Phosphotransferase) domain 1 218 458 - -
Lapu5g00739 689 MobiDBLite consensus disorder prediction 567 598 - -
Lapu5g00739 689 MobiDBLite consensus disorder prediction 450 472 - -
Lapu5g00739 689 FunFam probable serine/threonine-protein kinase At1g54610 218 459 - -
Lapu5g00739 689 Gene3D Phosphorylase Kinase; domain 1 122 217 - -
Lapu5g00739 689 Pfam Protein kinase domain 135 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00739 689 PANTHER CELL DIVISION PROTEIN KINASE 133 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00739 Lapu-Chr5 7243641 7249034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00739 127 460 Core Cell Cycle Gene Families AT5G10270 48.857 5.00e-111 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lapu5g00739 Pkinase 1.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00739 - K08819 gmx:100781209 1185.63