Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00733 ATGGCCTTAGACCAGTATTTTGAGGACGTTGTGCCCCAGTTGGATTCCCCTGAAGATAAGTCATCTCTCGAAACATGGAAATGTGCTGGTGATGATATTGCAGATTCGGATAAAAATGCCTCCAGTGGCTTTGATTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAACTTCCATAGTGCCTCTTCTGAAAATGAAGAGAAGCAACAATGTCCAGTATGCAAATCAGAAATCTCGCAGTCATCACTTGTTCCACTATATGGCCGTGACCAAACCAGGATACCTTCTAAAGGTAAAGGTCACCAAGCAGGAATTGTGATACCAAGAAGACCCCTTGGTCCTTCATGGCTGACCAACTCACCAAGATCACATGATTCTGAAACTGTTTCCCGGCATACTTCTCATGTTTATCACAGCCATTACCCGAATCATCCTCAACAATTCAACTCGATTCCTGGCAGTTACCATTCACCAATATTCAACACTGGTGGTTCACTAGCTAATGCATTTGATACAACATATGGAGTCTTTGGAGAGATGATATATGCAAGGGTCTTTGGAAACCAGATGACTAACGTATACACATACCCGAATTCATATGATCTTTCAGGGAACAGTAATCCAAGGGTCAGAAGGCACTTAATGCAAGTTGATAGGTCACTCAATAGAATCACATTTTTCCTCTTTTGTTGCATAGTTTTGTGTCTTCTCTTGTTCTGA 774 0.4264 MALDQYFEDVVPQLDSPEDKSSLETWKCAGDDIADSDKNASSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFHSASSENEEKQQCPVCKSEISQSSLVPLYGRDQTRIPSKGKGHQAGIVIPRRPLGPSWLTNSPRSHDSETVSRHTSHVYHSHYPNHPQQFNSIPGSYHSPIFNTGGSLANAFDTTYGVFGEMIYARVFGNQMTNVYTYPNSYDLSGNSNPRVRRHLMQVDRSLNRITFFLFCCIVLCLLLF* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00733 257 ProSiteProfiles Zinc finger RING-type profile. 46 93 IPR001841 -
Lapu5g00733 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 113 IPR013083 -
Lapu5g00733 257 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 254 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lapu5g00733 257 SMART ring_2 46 92 IPR001841 -
Lapu5g00733 257 SUPERFAMILY RING/U-box 41 105 - -
Lapu5g00733 257 ProSitePatterns Zinc finger RING-type signature. 61 70 IPR017907 -
Lapu5g00733 257 Pfam Zinc finger, C3HC4 type (RING finger) 46 92 IPR018957 GO:0046872
Lapu5g00733 257 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 29 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00733 Lapu-Chr5 7159740 7160513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00733 39 257 C3H Transcription Factor Family AT4G28270 35.841 4.54e-40 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00733 K10666 - gmx:100785491 426.017