Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00711 ATGAACAGAATGGAATCTCAGGTGAAGCACGCTCTTGTTGTGAAAGTTATGGGTCGTACTGGGTCTAGAGGGCAGGTGACTCAGGTTAGAGTGAAGTTTTTGGATGATCAAAACAGGCACATCATGAGGAATGTGAAAGGACCTGTGAGAGAAGGAGACATTCTCACCCTACTTGAGTCCGAAAGAGAAGCAAGAAGGTTGCGCTAG 207 0.4638 MNRMESQVKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRHIMRNVKGPVREGDILTLLESEREARRLR* 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00711 68 Pfam Ribosomal protein S28e 7 67 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lapu5g00711 68 FunFam 40S ribosomal protein S28 1 68 - -
Lapu5g00711 68 CDD S1_S28E 9 68 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lapu5g00711 68 SUPERFAMILY Nucleic acid-binding proteins 4 68 IPR012340 -
Lapu5g00711 68 Hamap 30S ribosomal protein S28e [rps28e]. 1 68 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lapu5g00711 68 Gene3D - 1 68 IPR012340 -
Lapu5g00711 68 PANTHER 40S RIBOSOMAL PROTEIN S28 4 68 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lapu5g00711 68 ProSitePatterns Ribosomal protein S28e signature. 59 67 IPR028626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00711 Lapu-Chr5 6898207 6898469 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00711 4 68 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 87.692 1.23e-35 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00711 K02979 - gmx:100811085 103.99