Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00705 ATGAAGATTGCTTCTTTCTTCTCCAACGCTTTCCACAACTTCCCTTTATGCTACAAGCTCGTTCTCCTGTGCACTCTAAGTGGTGGAGGAGTGGTTTCATACTCAGAATCACTGTCTGATGCCAAACCTCATGCTCCTAGTGTTGATACTAATAAGCCCAAGAAAAAGAAAGTGGTGGTTCTTGGAACAGGATGGGCTGGTACCAGTTTCCTTAAGGATCTTGATGCTTCCTTATATGATGTTCAGGTTGTTTCCCCTCGTAACTACTTTGCATTCACTCCTTTATTACCCAGTGTCACTTGTGGAACAGTCGAAGCTAGGAGCATCGTGGAGCCAGTCAGAAACATGATAAAAAAGAGAAAAGGAGAAATTAATTTTTGGGAGGCAGAGTGCCTGAAGATTGACTCTGCAAACAAACAGGTTCTCTGTCGGTCAAATATCGACAACTTAGTGGGAAATGATGAATTTTTTTTGGATTATGATTTCTTGGTTGTAGCAATCGGAGCACAAGTAAATACATTCAACACACCCGGTGTCATGGAGAATTGTCATTTTCTTAAGGAGGTAGAGGATGCACAGAAGATCAGACAGTCAGTGATAGATTGCTTTGAGAAGGCAGTGCTTCCATCTCTATCTGAAAAAGAACGAAGGACAAATCTGCATTTTATAGTTGTTGGAGGAGGTCCAACAGGAGTGGAATTTGCTGCTGAGCTTCATGATTATGTCCAAGAAGATTTAGTCAACTTATACCCATCTGTCAAAGATATAGTGAAGATAACAGTGATTCAATCAGGAGATCACATCTTGAACACGTTTGATGCAAGAATTAGTTCATTTGCCGAGCAGAAGTTTGGAAGAGATGGTATAGAAGTTCAAACAGGATGTCGAGTTATAAATGTCAATGACAAGGAAATTACAGTAAAAGTGAAAGCAACAGGAGAGTTGTGTTTTTTACCCCATGGATTGGTTGTCTGGTCCACTGGAATCGCAACTCGTCCGGTTGTGAGAGATTTTATGGAACAAATTGGTCAGGGAAAAAGGAATGTCCTAGCAACAGATGAATGGTTGCGAGTGAAGGGATCTGAATCTGTGTATGCCATCGGTGATTGTTCTTCAATAAATCAACGTAAAATCATGGACGATTTCTTGGCCATTTTTGAAGCTGCAGACAAGGACAAATCAGGCACCTTAACTGTTGAAGAATTCAAGGATGTGTTAGACGACATTATCTTAAGATATCCACAAGTGGAACTCTATATGAAGAGCCAACATCTGTTTGATTTCTCTGCTCTGTGGAAAGATTCCGAAGGAAATGATAGGGAGGAAATCGGCGTAGAAGAGTTTAAGATGGCCATTTGTCATATGGATTTGCAGATGAAGAATCTGCCAGCAACTGCACAGGTTGCTTCACAACAGGGTGCATATCTGGCTAGATGCTTTAACCTTAGGGATCAGTGTGCAGAGCATCCTGAAGGTCCTCTGAGATTTGGAAAATCTGGACGCCACAAGTTTCGTCCATTCAGGTATAAGCATTTTGGACAATTTGCTCCCCTTGGTGGAGCGCAAGCAGCTGCAGAACTTCCTGGAGACTGGGTTTCCATGGGACACAGCACTCAATGGCTTTGGTATTCTGTATACGCAAGCAAGCAAGTGAGCTGGCGAACAAGGGTGTTAGTCATTTCAGATTGGACAAGAAGATTCATATTTGGGAGAGATTCTAGTCGTATTTAA 1731 0.4188 MKIASFFSNAFHNFPLCYKLVLLCTLSGGGVVSYSESLSDAKPHAPSVDTNKPKKKKVVVLGTGWAGTSFLKDLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNMIKKRKGEINFWEAECLKIDSANKQVLCRSNIDNLVGNDEFFLDYDFLVVAIGAQVNTFNTPGVMENCHFLKEVEDAQKIRQSVIDCFEKAVLPSLSEKERRTNLHFIVVGGGPTGVEFAAELHDYVQEDLVNLYPSVKDIVKITVIQSGDHILNTFDARISSFAEQKFGRDGIEVQTGCRVINVNDKEITVKVKATGELCFLPHGLVVWSTGIATRPVVRDFMEQIGQGKRNVLATDEWLRVKGSESVYAIGDCSSINQRKIMDDFLAIFEAADKDKSGTLTVEEFKDVLDDIILRYPQVELYMKSQHLFDFSALWKDSEGNDREEIGVEEFKMAICHMDLQMKNLPATAQVASQQGAYLARCFNLRDQCAEHPEGPLRFGKSGRHKFRPFRYKHFGQFAPLGGAQAAAELPGDWVSMGHSTQWLWYSVYASKQVSWRTRVLVISDWTRRFIFGRDSSRI* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00705 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 58 77 - -
Lapu5g00705 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 160 178 - -
Lapu5g00705 576 PRINTS FAD-dependent pyridine nucleotide reductase signature 221 239 - -
Lapu5g00705 576 ProSiteProfiles EF-hand calcium-binding domain profile. 377 412 IPR002048 GO:0005509
Lapu5g00705 576 SUPERFAMILY FAD/NAD(P)-binding domain 55 273 IPR036188 -
Lapu5g00705 576 SUPERFAMILY EF-hand 332 462 IPR011992 -
Lapu5g00705 576 ProSitePatterns EF-hand calcium-binding domain. 390 402 IPR018247 -
Lapu5g00705 576 Gene3D - 435 575 - -
Lapu5g00705 576 Gene3D - 45 391 - -
Lapu5g00705 576 SMART efh_1 381 409 IPR002048 GO:0005509
Lapu5g00705 576 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 47 406 - -
Lapu5g00705 576 Pfam Pyridine nucleotide-disulphide oxidoreductase 56 377 IPR023753 GO:0016491
Lapu5g00705 576 PANTHER NADH DEHYDROGENASE 49 576 IPR045024 GO:0003954|GO:0006116
Lapu5g00705 576 SUPERFAMILY FAD/NAD(P)-binding domain 219 374 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00705 Lapu-Chr5 6808630 6813989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00705 7 576 Chloroplast and Mitochondria Gene Families AT4G21490 62.522 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00705 K03885 - gmx:100793566 932.939