Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00688 ATGGGAAGATCACCTTGTTGCAACAAAAATGGTCTCAAAAAAGGTCCATGGACTCCTGAGGAGGATCTCATGCTCACCAACTACATTCACACTCATGGACCTGGAAATTGGCGAACCCTCCCCAAGAATGCTGGTTTACAACGATGTGGTAAGAGTTGCCGTCTTCGATGGACTAATTACCTTAGACCCGATATCAAGAGAGGAAGGTTCTCGTTTGAAGAAGAAGAGACCATCATTCAACTTCACAGTGTTTTGGGAAACAAGTGGTCGGCAATAGCAGCTAGGTTGCCAGGGAGAACCGACAATGAGATAAAGAACTATTGGAACACTCACATTAGGAAGAGGTTGCTTCGAATGGGCATTGACCCTGTTACACACGCTCCACGCCTTGATCTTCTCGACATGTCTTCGATTCTGAGGTCAGCAATAGGCAACGTTAATCCATCGTTTCTGAATCTGCAAGGCTTATTGGGCGCCCAAGCGTTGATGAACCCAGAGTTTCTGAAGCTTGCTGCCACTGCCACTTTGTTATCTTTGAAGAATGATCACAACCCATCAAACATGGTTTCACAAGTGCAACAATTCAATAACAATGCCGGTCAAGTGCAAAGCCAAGCTGTCCCTAGTCAGTTTCAGACTCCAACTCAAAGCAACAACATGAACAATGGCTTTTCAATGTCCCCTGATAATTCAATTCCTTCCTATCTTGGTGAGCATAATTACCTGAATAATGCTCAACAAAACCAAGTTGATTTGCTACAAGACCCGGAATTAGTACATTTGTTAAACAATGCAAACCAAAACATAGGCTATGAATCGGTTCTGTCTACGCCTTTGTCGACCCCAACCCCATTGAATTCATCCCCCACTTATGTGAATAGCAGCACGGATGAAGAGAGGGACACGTATTGCAGCGATGTATTCAAGTTAGAAATTCCCGAGAGTCTGGACATCAGTGATTTCTTGTAA 969 0.4407 MGRSPCCNKNGLKKGPWTPEEDLMLTNYIHTHGPGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVLGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDMSSILRSAIGNVNPSFLNLQGLLGAQALMNPEFLKLAATATLLSLKNDHNPSNMVSQVQQFNNNAGQVQSQAVPSQFQTPTQSNNMNNGFSMSPDNSIPSYLGEHNYLNNAQQNQVDLLQDPELVHLLNNANQNIGYESVLSTPLSTPTPLNSSPTYVNSSTDEERDTYCSDVFKLEIPESLDISDFL* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00688 322 CDD SANT 69 112 IPR001005 -
Lapu5g00688 322 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu5g00688 322 Gene3D - 13 66 - -
Lapu5g00688 322 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu5g00688 322 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lapu5g00688 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lapu5g00688 322 CDD SANT 16 61 IPR001005 -
Lapu5g00688 322 FunFam MYB-related transcription factor 13 66 - -
Lapu5g00688 322 FunFam Transcription factor MYB39 69 130 - -
Lapu5g00688 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lapu5g00688 322 MobiDBLite consensus disorder prediction 279 299 - -
Lapu5g00688 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 248 - -
Lapu5g00688 322 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lapu5g00688 322 Gene3D - 69 116 - -
Lapu5g00688 322 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu5g00688 322 SMART sant 66 114 IPR001005 -
Lapu5g00688 322 SMART sant 13 63 IPR001005 -
Lapu5g00688 322 MobiDBLite consensus disorder prediction 279 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00688 Lapu-Chr5 6678568 6679747 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00688 1 322 MYB Transcription Factor Family AT4G21440 48.333 1.33e-102 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu5g00688 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00688 K09422 - gmx:100812189 520.39