Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00673 ATGAAGAACTGTGAGCTTTGCAAGGTTCCGGCCCGGACCTTCTGCGAGTCGGACCAGGCCAGCTTATGCTGGGACTGCGACGCCAAGGTCCACGGTGCCAACTTCCTCGTCGCCAGACACACGCGCACCCTCCTCTGCCACGCGTGCCAGTCACCCACGCCCTGGAAGGCCTCCGGCACCGCCCTCGGCAACACCGTCTCCCTCTGTGAGAGGTGCGCCGGCGGAACCGCCGAACAAGGTCAGGAGAGCCAAGGAGGCAATGACGATGACTTAGACACAGACGAAGAGGATGACTACGACGACGATGATGACACCAACGACGAGGTCGCCGCCGATGAGGACGGAGACAACCAGGTTGTCCCTTGGTCCTCCGCGCCGCCGCCGCCTGCCCCGAGCTCTTCCAGCAGCGAAGAGTCGGTTAGCCGGTGCAACGACATCTACGAGGATGTTTCGACCACATTGAAACGACGTCGTCAGGACAATGATTTCGAGTGTTCGAATTCGAATAATTGGGGATGTCAGCGGAGCGAAGTGGAGAGGGGAGGTTGGTTGGTTCGGTTGCGGCGGCGAACCGCCGCGGAAGGTGACGGTGTTGCGGTTGAGCGACGGAATGGTAGAGCGGTGGTTCCGTATGGTTGCGGTTATGATGATAGAGCCTCTGAAGACGTTTGA 672 0.6027 MKNCELCKVPARTFCESDQASLCWDCDAKVHGANFLVARHTRTLLCHACQSPTPWKASGTALGNTVSLCERCAGGTAEQGQESQGGNDDDLDTDEEDDYDDDDDTNDEVAADEDGDNQVVPWSSAPPPPAPSSSSSEESVSRCNDIYEDVSTTLKRRRQDNDFECSNSNNWGCQRSEVERGGWLVRLRRRTAAEGDGVAVERRNGRAVVPYGCGYDDRASEDV* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00673 223 SMART bboxneu5 1 45 IPR000315 GO:0008270
Lapu5g00673 223 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Lapu5g00673 223 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 173 - -
Lapu5g00673 223 Pfam B-box zinc finger 2 43 IPR000315 GO:0008270
Lapu5g00673 223 CDD Bbox1_BBX-like 4 45 - -
Lapu5g00673 223 MobiDBLite consensus disorder prediction 85 114 - -
Lapu5g00673 223 MobiDBLite consensus disorder prediction 77 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00673 Lapu-Chr5 6421631 6423637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00673 2 195 C2C2-CO-like Transcription Factor Family AT5G54470 44.550 1.57e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu5g00673 zf-B_box 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00673 - - gmx:100801024 320.857