Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00666 ATGCACATGTTAGCGAAAGCACATAGTAAAGGGGATGGAACCAAGTCCCTGGCTAAGATACTGGCGAAATGGAAAGAATATAATGCCCAGCTTGATTCCTGCAATGATGCGGACAAGCCAGTTCGCAAAGTTCCTGCCAAGGGATCGAAAAAAGGGTGTATGAAAGGTAAAGGGGGGCCTGAGAACTCGCGGTGTAACTACAGAGGTGTTAGGCAGAGGACTTGGGGAAAGTGGGTTGCTGAAATCCGAGAGCCGAACAGAGGGAATAGGCTCTGGCTAGGTACTTTTCCCACTGCCATTGGAGCTGCCCTTGCATATGATGAAGCAGCGAGGGCAATGTATGGATCATGTGCCCGTCTCAACTTTCCCCATGTTTCAGTTTCCAGTTTCTCTGAGGAATCCTCGAAAGATTCTCCAGTGGCGAATCATTCTGGTTCCTCAATGGCAGTCTCTGCAAATGAATCCATGGTTTCACCAAGTAACTCTAAGGGGGGAGGCGCACAAGAGGATGTTGATATGGAGCCCATTTCCTTATCCTTAAGTGTAAAGCATGAGAACGGGGAAGGTGAATCAGGGATAAGTTCATCCCCTCCTTCTTCATAA 603 0.4826 MHMLAKAHSKGDGTKSLAKILAKWKEYNAQLDSCNDADKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPTAIGAALAYDEAARAMYGSCARLNFPHVSVSSFSEESSKDSPVANHSGSSMAVSANESMVSPSNSKGGGAQEDVDMEPISLSLSVKHENGEGESGISSSPPSS* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00666 200 MobiDBLite consensus disorder prediction 130 165 - -
Lapu5g00666 200 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Lapu5g00666 200 FunFam Ethylene-responsive transcription factor 2 65 124 - -
Lapu5g00666 200 SUPERFAMILY DNA-binding domain 66 124 IPR016177 GO:0003677
Lapu5g00666 200 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Lapu5g00666 200 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Lapu5g00666 200 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
Lapu5g00666 200 CDD AP2 65 124 IPR001471 GO:0003700|GO:0006355
Lapu5g00666 200 MobiDBLite consensus disorder prediction 130 200 - -
Lapu5g00666 200 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Lapu5g00666 200 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Lapu5g00666 200 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 174 - -
Lapu5g00666 200 MobiDBLite consensus disorder prediction 40 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00666 Lapu-Chr5 6355827 6358325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00666 10 127 AP2-EREBP Transcription Factor Family AT2G40350 63.934 8.50e-52 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu5g00666 AP2 3.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00666 - - gmx:100527471 330.872