Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00654 ATGGACATGAATTCCTCAGGTGGTGCCTCTGGTTGGCTTTATGATTATGGCTTTGATATCCCTGTTGCTGGTGCTGACTTCATGGCTGCAGCAGACTCTGGAGGTTTTAGTTGGGGGCCTCAAAGTCACACCTTAAAGGGTCCTTCAAATACGAGCTTGGAAATGGAATACTCACTCGATTCAACTGTCCTGGAAAATGGTCCTTCAAAGCGGTTAAGGACTGAGTCATGTGCATCTGGCTCCAAGGCATGTCGCGAAAAATTGCGAAGGGATAAACTGAATGAGAGGTTTCTGGAATTGAGTTCCATCTTGGAGCCTGGTAGGCCGCCCAAAACAGATAAAGTTGCAATATTAAGTGATGCTGCTAGAGTGGTAGTCCAATTGAGAAATGAAACGGAGAGGCTGAAGGAAATGAATGATGAATTACAGGGAAAAGTTAAAGAATTGAAGGCTGAGAAGAATGAGCTTCGTGACGAGAAGAATCTGCTGAAGGAAGAGAAAGAAAAGTTGGAGCAGCAGGTAAAACTGACAAATATACAGCACAGCTTCCTCCCTCAAGCCCCAGCTGCTAAAGGACAAGTTGGTAGCCACAAGCTGGTACCTTTCATTGGCTATCCTGGAATAGCTATGTGGCAGTTTATGCCCCCTGCTGCAGTTGATACATCAAAGGATCATCTGCTTCGACCTCCAGTTGCATAA 699 0.4549 MDMNSSGGASGWLYDYGFDIPVAGADFMAAADSGGFSWGPQSHTLKGPSNTSLEMEYSLDSTVLENGPSKRLRTESCASGSKACREKLRRDKLNERFLELSSILEPGRPPKTDKVAILSDAARVVVQLRNETERLKEMNDELQGKVKELKAEKNELRDEKNLLKEEKEKLEQQVKLTNIQHSFLPQAPAAKGQVGSHKLVPFIGYPGIAMWQFMPPAAVDTSKDHLLRPPVA* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00654 232 SMART finulus 83 134 IPR011598 GO:0046983
Lapu5g00654 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 83 152 IPR036638 GO:0046983
Lapu5g00654 232 CDD bHLH_AtILR3_like 82 157 - -
Lapu5g00654 232 PANTHER BHLH TRANSCRIPTION FACTOR 3 232 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Lapu5g00654 232 Gene3D - 81 158 IPR036638 GO:0046983
Lapu5g00654 232 Coils Coil 118 180 - -
Lapu5g00654 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 77 128 IPR011598 GO:0046983
Lapu5g00654 232 Pfam Helix-loop-helix DNA-binding domain 81 127 IPR011598 GO:0046983
Lapu5g00654 232 FunFam Transcription factor bHLH34 69 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00654 Lapu-Chr5 6179059 6181170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00654 10 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 53.617 2.26e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu5g00654 HLH 3.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00654 - - gmx:100806838 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00654 5 6179059 6181170 Lapu5g00654 5 6179059 6181170 ECH