Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00648 ATGTGCAAAGGTGCAGAAGGACAACAGAAACACAGTTTCTGCAGCAACTTCCTACATAAGAGATCAACAACAAGTGCTAAATGTTGTGAGCTATGTGGATTACAGGCTTCGTTGTATTGTCAAGCTGATGATGCATACTTGTGTAGAAAATGTGATAAAAGGGTTCACGGAGCTAATTTTTTGGCCCTTAGACACATTAGGTGCTTTCTGTGCAACACATGTCAGAACCTTACGCGAAGATATCTCATTGGAGAATCACTAGAGGTGGTTCTTCCACCCAACATAAACTGGGCCATAGGAAACCTTCCTAACAACAGAGAAACCTACAGAAAGTGTTCAAGAATGCATAACAACCCTTCCCTCTTGATTTAA 372 0.4113 MCKGAEGQQKHSFCSNFLHKRSTTSAKCCELCGLQASLYCQADDAYLCRKCDKRVHGANFLALRHIRCFLCNTCQNLTRRYLIGESLEVVLPPNINWAIGNLPNNRETYRKCSRMHNNPSLLI* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00648 123 CDD Bbox1_BBX-like 28 70 - -
Lapu5g00648 123 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 28 78 - -
Lapu5g00648 123 SMART bboxneu5 24 70 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00648 Lapu-Chr5 6151562 6152654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00648 29 107 C2C2-CO-like Transcription Factor Family AT3G21890 53.750 7.05e-24 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00648 - - pvu:PHAVU_005G113200g 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00648 5 6151562 6152654 Lapu5g00648 5 6151562 6152654 ECH