Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00647 ATGGAACCTCTATGTGAGTTTTGTTGGGCTGTGAGAGCTGTGGTTTACTGCAAGTCAGATTCTGCTCGTCTCTGCTTGCATTGCGATGGCCGTGTGCACTCTGCAAATTCTTTGTCTCGCAGGCATTCGCGTTCCCTCCTTTGCGATAAGTGCAATTCCCAGGCAGCAATGATACGTTGCATGGATCATAAGTTGTCTTTGTGTCAAGGTTGTGACTGGAGCCCGAATGAGTGTTCTGCATTGGGACATAGGCGCCTCACGTTGAATTGTTACGCTGGTTGTCCTTCTTTGGCTGAGTTTTCTAGGATGTGGTCCTTTGTGTTTGATGTTAATTCCTCACATGGTGGTTGGGAATCGGTTAGTACTTTGCCAAAAAGTGAGAGCTGCACTAGCCAGTGTTTGGAGCAACCTGATCATAATGGTGCTTCCTTTGGTTTAGTGAGTGAGAAGTTGGATGAAATTGAATCTTGTGTCAAATATGAACCTTGGATGGGGCCATCTCACATCATTCCCTCAAATCCAAATTACATACCGTACTGCAAAGAAGAAGCATTTTTCCTTCATCAAGACTCAAACCAGCCGAAGGCGCAGGATTGTACTAATCTAGGAACTCGTGATGGGAATGGACTCTGTGAAGGTCTCAATGTGGACAGCGCTCCAATAAGTTTTGAAAGTGCTGAGGAAATATTTGGCTGTTCACAAGCTGCCACAAGATACCACCTTGAAGATGGAGCAATGGACTGTCTATTGATGGATAAAAACATATCAGTCACGGAATCTAGCTCACTTATAGAGAGTGCCTTGGAGGCATCATCATCAATTCAGCAAGATTGTGTGGCTTTTCAGTCATCTAGGGCTGGTGGATCAGCTAGTGTGATGCAGGTTATGAACAGTAATACAAATTGTGCACTAATGGATCCTAGCAGCACTAGAAACATCAGTCTGGGATTTCCTCAGGGTCAAGTTCATTCAAACATACCTCTTCAATTAGGTAACATTGTGGGTGAAAATAGTTCTACTGAATATCAAGACTGCGGGATATCGCCAATGTTTCTGCCGGGTGAATTCCCCTGGGAATCAAATTTGGAGGGTACATGCCCACAAGCAAGGGATAAAGCAAAAATGAGATACAATGAGAAAAAGAAAACTCGAACGTTTGGTAAGCAAATAAGATATGCATCTCGCAAAGCGAGGGCTGATACAAGAAAACGTGTGAAAGGTAGATTTGTTAAAGCAGGTGAAGCATATGATTATGACCCTCTTGTGACAAGGGACGTCTAA 1281 0.4379 MEPLCEFCWAVRAVVYCKSDSARLCLHCDGRVHSANSLSRRHSRSLLCDKCNSQAAMIRCMDHKLSLCQGCDWSPNECSALGHRRLTLNCYAGCPSLAEFSRMWSFVFDVNSSHGGWESVSTLPKSESCTSQCLEQPDHNGASFGLVSEKLDEIESCVKYEPWMGPSHIIPSNPNYIPYCKEEAFFLHQDSNQPKAQDCTNLGTRDGNGLCEGLNVDSAPISFESAEEIFGCSQAATRYHLEDGAMDCLLMDKNISVTESSSLIESALEASSSIQQDCVAFQSSRAGGSASVMQVMNSNTNCALMDPSSTRNISLGFPQGQVHSNIPLQLGNIVGENSSTEYQDCGISPMFLPGEFPWESNLEGTCPQARDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAGEAYDYDPLVTRDV* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00647 426 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lapu5g00647 426 CDD Bbox1_BBX-like 4 47 - -
Lapu5g00647 426 ProSiteProfiles CCT domain profile. 370 412 IPR010402 GO:0005515
Lapu5g00647 426 Pfam CCT motif 370 412 IPR010402 GO:0005515
Lapu5g00647 426 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lapu5g00647 426 ProSiteProfiles Zinc finger B-box type profile. 43 88 IPR000315 GO:0008270
Lapu5g00647 426 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00647 Lapu-Chr5 6144241 6147289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00647 1 420 C2C2-CO-like Transcription Factor Family AT3G21880 43.059 3.33e-101 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu5g00647 CCT 1.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00647 - - vra:106761521 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00647 5 6144241 6147289 Lapu5g00647 5 6144241 6147289 ECH