Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00643 ATGGAACCCTTTTGCCCTATTGGGTTGTCGTGTGCCTCTGAAATCTCTGCTCTTCTCTCTCCTCCCTCACCTCTTCAAGTACAGGAATATTATCACAAACTTTTGTCTACAAGAGGGTGCACTGGTATCTCAGTCAAACAGGATGGCAACTTTGGAAAAGGCGTATATGCAGACATGGACTTCAAAGAGGGAGAGCTTGTTCTGAAGGACCCCATGTTTGTAGGGGTTCAACATTCCCTCAATAAGATTGATTGTTTGGTCTGTACTTTCTGCTTTCGTTTTATTGGTTCCATTGAACTTCAAATAGGAAGGAGGCTCTACATGAAGCAATTAAGGGCCAATGAGAGTCATGGATGTGATGTCGGGAACTCTTCACAACACTTCCATGGAATGGATTCATCTGATGAAGAAGAGATCACTCAGCAATGTACTTCTGGGAGTTCCAAAACTAAGGTTCCTCTCCCTGAAGGTGTTGTGGAATCATTAATGAATGGCCAATTGGTGTTGCCTTGCTCCGAGAAGTTCTCCTTGTTGCCGGCTGTTCCATGCCCTGGTGGATGTGGAGAAGCTTACTATTGCAGCATGTCATGTGCAGAGGCTGATTGGGAATCCTCCCATTTGCTACTCTGTACTGGTGAGAGTTCTGATCCAGCTCGTAGAGAGGCTCTCCTTAAATTCATCAAACATTCTAATGAAACTAATGATATATTCGTCCTTGCTGCAAAGGCTATTTCTTCAACCATATTAAAGTATCGCAAGTTAAAAGCAGCCAGTCTTGAAAAACAAGTGAAACATGATACATCCTGTGTTTCAAACCACAGTAGTTTATCTTTTCTTTTGGAAGCTTGGAGGCCTATATCGATGGGACACAAGAGAAGGTGGTGGGAGTGTATTGCTTTGCCAGATGATGTTGATTCTTCTGACGAAGCTTCATTCAGGTTGCAAATCAAAGAGTTGGCACATGAGTCTCTCCAACTTCTTAAGGCAGCCATGTTTGACAAGGAATGTGAGCCATTATTTTCGCTTGAAATATATGGGCATATCATCGGCATGTTTGAGCTGAATAATCTTGATTTGGTTGTGGCTTCTCCGGTGGAGGATTACTTTTTATACATTGATGATCTAACACATCCTAATAAGGAAGAGGCTGAGAAAATTACACAACCTATTCTGGATGCACTTGGTGAAGACTATTCTATTTGTTGCGAAGGGACTGCATTTTTCCCTTTGCAAAGCTGCATGAACCATTCCTGTTGTCCTAATGCCAAAGCTTTCAAAAGAGATGAGGATAAAGACGGCCAAGCAACAATAATTGCACAGAGGCCCATTTGTAAAGGAGAAGAGATAACCATATCATATGTTGATGAGGACCTTCCATTTGAAGAGAGGCAGGCATCCCTTGCAGATTATGGTTTCAGATGCAGGTGTCCAAAATGCATTGAAGAAGAGCCATAA 1455 0.4241 MEPFCPIGLSCASEISALLSPPSPLQVQEYYHKLLSTRGCTGISVKQDGNFGKGVYADMDFKEGELVLKDPMFVGVQHSLNKIDCLVCTFCFRFIGSIELQIGRRLYMKQLRANESHGCDVGNSSQHFHGMDSSDEEEITQQCTSGSSKTKVPLPEGVVESLMNGQLVLPCSEKFSLLPAVPCPGGCGEAYYCSMSCAEADWESSHLLLCTGESSDPARREALLKFIKHSNETNDIFVLAAKAISSTILKYRKLKAASLEKQVKHDTSCVSNHSSLSFLLEAWRPISMGHKRRWWECIALPDDVDSSDEASFRLQIKELAHESLQLLKAAMFDKECEPLFSLEIYGHIIGMFELNNLDLVVASPVEDYFLYIDDLTHPNKEEAEKITQPILDALGEDYSICCEGTAFFPLQSCMNHSCCPNAKAFKRDEDKDGQATIIAQRPICKGEEITISYVDEDLPFEERQASLADYGFRCRCPKCIEEEP* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00643 484 CDD SET_SMYD 393 479 - -
Lapu5g00643 484 Pfam SET domain 52 453 IPR001214 GO:0005515
Lapu5g00643 484 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR2 14 483 IPR044237 GO:0008168
Lapu5g00643 484 Gene3D SET domain 369 483 IPR046341 -
Lapu5g00643 484 ProSiteProfiles SET domain profile. 41 454 IPR001214 GO:0005515
Lapu5g00643 484 SUPERFAMILY SET domain 40 479 IPR046341 -
Lapu5g00643 484 SUPERFAMILY HIT/MYND zinc finger-like 179 211 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lapu5g00643 SET 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00643 - - gmx:100803651 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00643 5 6112306 6118558 Lapu5g00643 5 6112306 6118558 ECH