Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00641 ATGCGGGTTGCTATTGTCACAAAAGCAAACCAATTTTTCATTGAAGTTGGTGCCCAAGAAACAGTTGTAGCAATCAAGAGGAGAATAGAGCAACTTCATGGGATTCCAGTGGCTTCACAAGTCCTCTCAGTTACTGGGTGGGAACTTGTTGATGGATTAGACATGGATGATTATCCAATAGTGATTGAAGGTACAAAAATTGACCTCACCATCAAACCAGTGGAGCCACACCCTAACAAAGTGCAAATCACAGTGAAATTTTCAGCTAAAAAGCTCAACATTGAGGTGGACAGAACAGACACTGTTCGTAGCTTGAAGGAAAAAATTCACATAATTGATAGCACCCCCATCAAAAGAATGACACTGTACTTTTCAGGAACTGAGTTGGATGAAGATTTTAGAACCTTAAGTGAATATGGCATTCGCGAATTTTCTGAAATTGTTGTGTTCCTCAAGACCATGAATCGATCAAGAGATGAACCTCCCACTAGGAAGTTAAGCTTGGTAGTACAAACCTCTTCTAGCTTGCTTAATGCAGCCACCATTCCATTGGAGATGAGAGATGCAAACACAGTCAATGACTTGAAGCAGTTACTGATAAGCAGAAAGGTTTTGCCTGCTGATGACTATTTGTTTATACACAGGCAGAGGATCATGCGTGACAGTTGTAGCCTCAGGTGGCATGGTGTTGAAAATGGAGATTGTCTCTATGTGTTTAAGGGGACAATTAGCAGTAGCAGCTATGCATGA 750 0.412 MRVAIVTKANQFFIEVGAQETVVAIKRRIEQLHGIPVASQVLSVTGWELVDGLDMDDYPIVIEGTKIDLTIKPVEPHPNKVQITVKFSAKKLNIEVDRTDTVRSLKEKIHIIDSTPIKRMTLYFSGTELDEDFRTLSEYGIREFSEIVVFLKTMNRSRDEPPTRKLSLVVQTSSSLLNAATIPLEMRDANTVNDLKQLLISRKVLPADDYLFIHRQRIMRDSCSLRWHGVENGDCLYVFKGTISSSSYA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00641 249 CDD Ubl_ubiquitin_like 181 239 - -
Lapu5g00641 249 SUPERFAMILY Ubiquitin-like 73 160 IPR029071 -
Lapu5g00641 249 ProSiteProfiles Ubiquitin domain profile. 166 238 IPR000626 GO:0005515
Lapu5g00641 249 SUPERFAMILY Ubiquitin-like 177 242 IPR029071 -
Lapu5g00641 249 Gene3D - 153 245 - -
Lapu5g00641 249 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
Lapu5g00641 249 Gene3D - 80 152 - -
Lapu5g00641 249 Gene3D - 1 72 - -
Lapu5g00641 249 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Lapu5g00641 249 PANTHER UV EXCISION REPAIR PROTEIN RAD23 82 152 - -
Lapu5g00641 249 ProSiteProfiles Ubiquitin domain profile. 81 156 IPR000626 GO:0005515
Lapu5g00641 249 Pfam Ubiquitin family 8 72 IPR000626 GO:0005515
Lapu5g00641 249 Pfam Ubiquitin family 177 238 IPR000626 GO:0005515
Lapu5g00641 249 Pfam Ubiquitin family 83 153 IPR000626 GO:0005515
Lapu5g00641 249 SMART ubq_7 81 152 IPR000626 GO:0005515
Lapu5g00641 249 SMART ubq_7 1 72 IPR000626 GO:0005515
Lapu5g00641 249 SMART ubq_7 166 241 IPR000626 GO:0005515
Lapu5g00641 249 CDD Ubl_ubiquitin_like 83 150 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00641 81 152 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 35.616 3.81e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00641 - - gmx:100781557 431.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00641 5 6092505 6093254 Lapu5g00641 5 6092505 6093254 ECH