Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00639 ATGAAACATGACAGAATTTGTTTAGACTCAGGGAAGCGTGGATCTTCCAAGGTTGAATTTTCTGAAGACGAGGAAACTCTTATCGTCAGGATGTATAAACTGGTTGGGAAGAGGTGGTCTTTAATTGCTGGAAGAATTCCTGGAAGAACAGCAGAGGAAATAGAGAAGTATTGGACTTCGAGAGTCTCGAGTTCTAGTGAATGA 204 0.4118 MKHDRICLDSGKRGSSKVEFSEDEETLIVRMYKLVGKRWSLIAGRIPGRTAEEIEKYWTSRVSSSSE* 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00639 67 SMART sant 16 64 IPR001005 -
Lapu5g00639 67 FunFam MYB-like transcription factor 19 61 - -
Lapu5g00639 67 Pfam Myb-like DNA-binding domain 17 59 IPR001005 -
Lapu5g00639 67 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 66 IPR017930 -
Lapu5g00639 67 ProSiteProfiles Myb-like domain profile. 12 62 IPR001005 -
Lapu5g00639 67 CDD SANT 19 58 IPR001005 -
Lapu5g00639 67 Gene3D - 19 64 - -
Lapu5g00639 67 SUPERFAMILY Homeodomain-like 17 62 IPR009057 -
Lapu5g00639 67 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 13 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00639 Lapu-Chr5 6078430 6078773 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00639 12 63 MYB Transcription Factor Family AT5G14750 51.923 6.86e-16 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu5g00639 Myb_DNA-binding 7.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00639 - - gmx:100801532 114.005