Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00626 ATGGCGAGAACAGTCTCCAACAACGACAGCACCAACGATGAAACAGGCGATGACAGCAATGCTACAACGAAGGACGAGGGCGAGGTCAAAGGTCGCGTGAGGAAGGGGCCATGGACCCCAGCAGAAGACGCCATCCTTGTAGAGTACGTGAAGAAGCACGGTGAAGGGAATTGGAACTCTGTGCACAAGAATTCTGGGTTGTTCAGGTGCGGCAAAAGTTGCAGACTTCGCTGGGCCAACCATCTTAGGCCTAATCTCAAGAAAGGTGCATTCTCTCCTGAAGAAGAACAAGTCATCATCGACCTTCATTCCAAGCTTGGAAACAAATGGGCCCGAATGGCCGCACAGTTACCTGGCAGGACCGACAATGAAATAAAGAACTTTTGGAACACCAGAATGAAAAGGCGTCAGAGAGCAGGGTTACCCATTTATCCTCCTGAGGTGCATGCAGAAGCCACTGCATACCATCTACAACACCGCTACTTGGAACACCAACCCCATTCATCTGCGTCATTTGCTTTGCTCCTATCTTCTTGTTACCCCAAGAAGCTCAATGACCCTAGCCAAACCAATCATTCCAATGCGAATCCGCTGCAAAACCAACCTGATTCTGCCAACTGTTACATTAATCCAAGCCAGAAGCAGTTCAAGTTTTCCAATGAAAATGGTGGAAATACAAAGCTTTCTTTGCCATTATCTCCTCTTTCTCAGTATGGATCATCATCCTCTACCCTTCTTAGCCACAGTTTTGGTGATCATGGCTTCATATCAGGATCCCCATATGAACCCTTTTCGCTGGTGCCAGGCTCCACCCCTGATATCTCTTCCAACCAAACACCAACCCCTGCTTCATCCTATGCTAGTGGTGTTGATGGCCTGATGGGAGCTTCAAGCATGGTTAATAATAATAATAATAATAACAACAATAATAATGACTACTATGAAGTTGCACCATTGTCTCCTCCAGGAAACAGTGGCCTGCTGGATGCTCTAGTGATGGAGGCTCAAGGACTTTCTCACAATGACAAGTCCAAGAATGAGGAGGACCCAACCCTTGCTGGGAAGCTATCTTGTAAGAGAAAGAACATGGAATATGCAGAGGAGGGAGGCACTGCGCCTGTGGTGTCAGCCATGAAGAAGAACAGTGGCAAAAGTACTACTACTGAAAACCAGAGGGATGATGATAATGGCTCCTCTCAATTGTCAAAAGGGAAGAAAGTGATGGGGGAGGATCCGATGGAAGAGATGAACTCGATGGACGATGACTTGTTTAGTCTGCTGAATCAGTTTCCCTTAGAAATGCCAATGCCTGAGTGGTACCGTAGAGGGGAAAGTCAGTCATTGGGACTTGAAAACCAGCCCAATGCTTCACCACCTGACCCCGCTGATCAAGAGTATGCTTGGACTCTCGGAACTTGCTGGAACAACATGCCCAGCATATGCTAA 1446 0.4737 MARTVSNNDSTNDETGDDSNATTKDEGEVKGRVRKGPWTPAEDAILVEYVKKHGEGNWNSVHKNSGLFRCGKSCRLRWANHLRPNLKKGAFSPEEEQVIIDLHSKLGNKWARMAAQLPGRTDNEIKNFWNTRMKRRQRAGLPIYPPEVHAEATAYHLQHRYLEHQPHSSASFALLLSSCYPKKLNDPSQTNHSNANPLQNQPDSANCYINPSQKQFKFSNENGGNTKLSLPLSPLSQYGSSSSTLLSHSFGDHGFISGSPYEPFSLVPGSTPDISSNQTPTPASSYASGVDGLMGASSMVNNNNNNNNNNNDYYEVAPLSPPGNSGLLDALVMEAQGLSHNDKSKNEEDPTLAGKLSCKRKNMEYAEEGGTAPVVSAMKKNSGKSTTTENQRDDDNGSSQLSKGKKVMGEDPMEEMNSMDDDLFSLLNQFPLEMPMPEWYRRGESQSLGLENQPNASPPDPADQEYAWTLGTCWNNMPSIC* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00626 481 MobiDBLite consensus disorder prediction 1 17 - -
Lapu5g00626 481 FunFam MYB-related transcription factor 34 87 - -
Lapu5g00626 481 FunFam Transcription factor MYB97 90 168 - -
Lapu5g00626 481 Pfam Myb-like DNA-binding domain 38 97 - -
Lapu5g00626 481 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 13 447 - -
Lapu5g00626 481 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Lapu5g00626 481 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Lapu5g00626 481 MobiDBLite consensus disorder prediction 367 417 - -
Lapu5g00626 481 Gene3D - 90 136 - -
Lapu5g00626 481 MobiDBLite consensus disorder prediction 185 207 - -
Lapu5g00626 481 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
Lapu5g00626 481 MobiDBLite consensus disorder prediction 1 36 - -
Lapu5g00626 481 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Lapu5g00626 481 MobiDBLite consensus disorder prediction 443 463 - -
Lapu5g00626 481 MobiDBLite consensus disorder prediction 18 36 - -
Lapu5g00626 481 MobiDBLite consensus disorder prediction 386 400 - -
Lapu5g00626 481 SMART sant 34 84 IPR001005 -
Lapu5g00626 481 SMART sant 87 135 IPR001005 -
Lapu5g00626 481 CDD SANT 37 82 IPR001005 -
Lapu5g00626 481 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Lapu5g00626 481 Gene3D - 35 87 - -
Lapu5g00626 481 CDD SANT 90 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00626 Lapu-Chr5 5856103 5859188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00626 33 164 MYB Transcription Factor Family AT2G32460 69.930 3.37e-70 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu5g00626 Myb_DNA-bind_6 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00626 K09422 - gmx:100798860 746.888