Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00624 ATGGAGCTTCGTTCACGTAGACGCTTTTCCAATCCTAAAGTTTCTGGGAATGAGCAGCAGCCTAAGGATGATGATGCTGTTGTGGAAGATGAAACGAAGGGCCAGTGCAGCAACAATAAAGATAAAGGTGTTTCTGTTATATCTTCTGATTCGGATATAGTTTCTGGTTCTGATTCCGATTCCAACTATGAAGATGAAGATTTGGGTGGGAGCTCCCTGCCGGACTTGAATGTATATCCACTTTCAAGCATCAGTGCTTCTGGTGGAGAAGATTATGGTTCTGATTCATCTGATGGTGTCAAACCATCATCCCAAAAAGGAAAGGCGCCAAGGTCCAGAGAGAGAAGAAAGAGTATGAACACTGCAAAAGGAGAACCAAGTGATGTGGTTAGAGTGGTGGATCATGAATATTCAATGTTTTCACCAGTATTGGTTCCCTCTGTTTTTAAGGGAACTAAGAAGAGGAAATATACAAGAAAAGGAAGTAAAGGAGATTCTCGTCCAGTGTTGTTGTGGAATGCATGGGAAGAGGAGCAAGAGAAATGGATTGATCAGCATATATTAGAAGATGTTGACTTAGATAATAATAGTGAAGTAATGAATGAAACTGCCGAGGCGCCCTCTGATCTGACTATGCCTTTACTTAGATACCAGAGGGAATGGTTAGCCTGGGCTTTGAAACAAGAGCATTCTACGACTAGAGGTGGAATACTTGCAGATGAAATGGGAATGGGGAAGACTATTCAAGCAATTGCTCTTGTTCTTGCCAAACGTGAATTCCAAGAAAGTTGTGAACCAGATCAATCCATACCATGTTCATCCAGTCTGTTGCCTGCGATCAAAGGAACACTTGTCATATGTCCTGTGGTTGCTGTTACTCAGTGGGTCAGTGAGATTGATCGCTTTACTTTAAAAGGAAGCACCAAGGTACTGGTTTATCATGGGGCTAATAGAGGGAGGAGTGGGGATCGGTTTGCAGATTATGATTTTGTGATAACTACATACTCTGTTGTTGAGAATGAGTACAGGAAGCATATGATGCCTCCTAAAGAGAGATGCCCATATTGTGGAAAATTATTTTTGCCGAGTAAGCTGATGTATCATCAAAACTATTTTTGTGGACCTTATGCTGTTAGAACAGAAAAACAATCAAAGCAAGCTAAGAAGAAAAGAGAAGTTACTAAAGGGAAGACCGAGGAATGCGACAGTAGCAACATTTTGAAGGGTTCTATCAAGAGAAAGGGAGACAAAATGCACATAGATATGGAAGATTCTGATGCTGCACCTGTACGCAGCGATAGGTCATTTCTCCATGCTGTGAAATGGCAGCGGATCATATTGGATGAGGCACACTATATCAAATCTAGACACTGTAACACTGCTAAAGCAGTTCTTGCTTTAGATTCTACCTACAAATGGGCGTTAAGTGGCACTCCCCTTCAGAACCGAGTTGGAGAGCTGTATTCTCTGATACGGTTCCTGCAAATAACTCCTTATTCTTATTACTTGTGCAAGGACTGTGACTGCAGGATTCTTGATCACAGCTCTAAAGAATGTTCAGTCTGCACTCACAGTTCTGTGCGACATTTCTGTTGGTGGAACAAATATGTTGCCACACCAATTCAATCTTTTGGAAATGGTGATTCTGGGAAAAGAGCTATGATATTGCTTAAACATAAAGTTTTGAAGAACATAGTATTAAGGCGCACAAAAATAGGCAGGGCTGCTGATCTTGCACTTCCACCTAGAATTGTTTCATTGAGAAAGGATTGCCTGGATATTAAAGAGCAAGACTATTATGAATCGTTATACAATGAAAGTCAGGCACAATTTAATACATACATTGAAGCAAATACTCTGATGCATAATTATGCTCATATATTTGACCTCCTCACACGACTGCGTCAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAAGTTCAGGTTCAAGAAGTGCAGTTATGGGCAGTAATGCTACTACTGCTGAACAAATTTGTGGTATTTGCCATGAGCCAGCAGAAGATCTTGTTGTTACCTCCTGCGAGCATTCATTTTGCAGGGCATGCTTGATAGACTACTACTCTACTTCCTTGGGCCAAGTATCATGCCCCGCGTGCTCTAAATTACTTACAGTTGATTTAACATCCAACAAGGATGTTGGGGATCAGGCTAAAACAACAATTAAGGGTTTCAGATCCTCGAGCATTTTGAATAGAATTCGCCTTGAGAACTTTCAGACTAGCACTAAAATAGAGGCTTTGAGAGAAGAAATAAGATTCATGGTTGAAAGGGATGGTTCTGCCAAAGGGATTGTTTTTAGCCAATTCACATCATTCTTGGATCTTATAAACTACTCTTTACACAAGTCTGGAGTATCTTGTGTTCAGTTGAATGGAAGCATGTCATTGACTGCTAGGGATGCTGCCATTCGGAGATTCACTGAAGATCCGGATTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGGGGTGTTGCACTCAATTTGACGGTAGCTTCACATGTCTTCCTTATGGACCCTTGGTGGAACCCGGCCGTGGAGCGCCAGGCTCAAGACAGAATTCACCGAATAGGGCAATATAAACCTATAAGAATTGTGAGATTTGTCATCGAGAACACAATCGAGGAGAGAATTCTGAAACTCCAAGAGAAGAAAGAACTCGTGTTTGAAGGGACTATAGGTGGTTCTTCTGATGCTCTGGGGAAATTGACAGAGGCAGACTTGAGATTTTTGTTTGTTACCTAA 2769 0.4139 MELRSRRRFSNPKVSGNEQQPKDDDAVVEDETKGQCSNNKDKGVSVISSDSDIVSGSDSDSNYEDEDLGGSSLPDLNVYPLSSISASGGEDYGSDSSDGVKPSSQKGKAPRSRERRKSMNTAKGEPSDVVRVVDHEYSMFSPVLVPSVFKGTKKRKYTRKGSKGDSRPVLLWNAWEEEQEKWIDQHILEDVDLDNNSEVMNETAEAPSDLTMPLLRYQREWLAWALKQEHSTTRGGILADEMGMGKTIQAIALVLAKREFQESCEPDQSIPCSSSLLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGANRGRSGDRFADYDFVITTYSVVENEYRKHMMPPKERCPYCGKLFLPSKLMYHQNYFCGPYAVRTEKQSKQAKKKREVTKGKTEECDSSNILKGSIKRKGDKMHIDMEDSDAAPVRSDRSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALDSTYKWALSGTPLQNRVGELYSLIRFLQITPYSYYLCKDCDCRILDHSSKECSVCTHSSVRHFCWWNKYVATPIQSFGNGDSGKRAMILLKHKVLKNIVLRRTKIGRAADLALPPRIVSLRKDCLDIKEQDYYESLYNESQAQFNTYIEANTLMHNYAHIFDLLTRLRQAVDHPYLVVYSQSSGSRSAVMGSNATTAEQICGICHEPAEDLVVTSCEHSFCRACLIDYYSTSLGQVSCPACSKLLTVDLTSNKDVGDQAKTTIKGFRSSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLHKSGVSCVQLNGSMSLTARDAAIRRFTEDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSSDALGKLTEADLRFLFVT* 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00624 922 Pfam SNF2-related domain 229 644 IPR000330 GO:0005524|GO:0140658
Lapu5g00624 922 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 667 726 IPR013083 -
Lapu5g00624 922 ProSiteProfiles Zinc finger RING-type profile. 668 709 IPR001841 -
Lapu5g00624 922 SUPERFAMILY RING/U-box 662 713 - -
Lapu5g00624 922 Gene3D - 376 588 IPR038718 -
Lapu5g00624 922 CDD DEXDc_SHPRH-like 214 512 - -
Lapu5g00624 922 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 51 920 - -
Lapu5g00624 922 MobiDBLite consensus disorder prediction 18 37 - -
Lapu5g00624 922 Pfam Helicase conserved C-terminal domain 752 866 IPR001650 -
Lapu5g00624 922 ProSitePatterns Zinc finger RING-type signature. 683 692 IPR017907 -
Lapu5g00624 922 Gene3D - 591 920 IPR027417 -
Lapu5g00624 922 SMART ultradead3 210 502 IPR014001 -
Lapu5g00624 922 Pfam Zinc finger, C3HC4 type (RING finger) 668 708 IPR018957 GO:0046872
Lapu5g00624 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 569 IPR027417 -
Lapu5g00624 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 920 IPR027417 -
Lapu5g00624 922 MobiDBLite consensus disorder prediction 1 127 - -
Lapu5g00624 922 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 748 912 IPR001650 -
Lapu5g00624 922 Gene3D - 216 352 IPR038718 -
Lapu5g00624 922 MobiDBLite consensus disorder prediction 76 103 - -
Lapu5g00624 922 SMART helicmild6 783 866 IPR001650 -
Lapu5g00624 922 CDD SF2_C_SNF 750 877 - -
Lapu5g00624 922 SMART ring_2 668 708 IPR001841 -
Lapu5g00624 922 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 227 497 IPR014001 -
Lapu5g00624 922 MobiDBLite consensus disorder prediction 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00624 Lapu-Chr5 5789086 5796508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00624 141 922 RAD5 or RAD16-like Gene Family AT1G05120 66.709 0.0 1070
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu5g00624 SNF2_N 6.9e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00624 K15083 - gmx:100798333 1541.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00624 5 5789086 5796508 Lapu5g00624 5 5789086 5796508 ECH