Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00622 ATGGAGTGGACTAGAGGCCTCATCATAGGACGTGGCTCATCGGCCACCGTCTACACCGCCTCCTCCGCCCACTCCTCAACTGTCTCCGCCGTCAAGACTGCAGAGTTATCACCGTCAAACTCAGAAAAGCTTCAGAGAGAACAGAGGATTCTGTCTTCTCTGTTTTCTCCCCACATAGTTACCTATAAAGGTTGTAACGTTACAGAGGAAAACAGCATCCCATGGTTCAACCTCTTCATGGAGTACATGCCCTTTGGCACTCTCTCTCAGGAAATTTGCCGGCAGGGTGGGCGGCTTAGGGAGCCGGCCATTGTGCACTACGTGCGACAAGTCCTGCAGGGGCTAGAGTACTTGCATAATAAGGGTGTTGTGCATTGTGATATTAAAGGTAGCAACATTTTGATTGGTGAAGATGGAGCCAAGATTGGGGATTTTGGATGTGCCAAGTTGTTGAATGAGTCTCCGGTGGCGGCGATCGGCGGCACGCCAATGTTCATGGCGCCAGAGGTGGCGCGTGGGGAGGAGCAGGGGTACCCTGCTGATGTATGGGCGCTTGGGTGCACTGTGGTTGAAATGGCCACTGGGTTTGCGCCGTGGCCTAATTTAGAAGACCCTGTCACTGTGTTGTACCGTGTTGCATATTCCAATGACGTTCCTGAGATTCCAAGTTTCCTGTCTGAAGAAGCAAAGGATTTCTTGGGGAAGTGTTTTAGAAGGAATCCTAAAGAGAGGTGGACTTGTAGTCAGCTTCTGAAGCATCCGTTTCTTGGGCAATTCAGTTCCAATGATAAGGAAATTGATCAATCTAATTCATGTTCTCCAACAAGTATTCTTGAGCAGGGCTTTTGGAATTCTATGGAAGAGGCAGAGTGTGCCTCTGACCCTGGCAATGAGGTTCAGATTAAAAGTTCTGATGAGTCTCCCAAGGGTAGGATCAGAAGGCTGGCTCTGTGTTCAGAGGATCCAATATGGGAATTGGATGATGAAAATTGGATCACAACTAGGGGCAGTGAAGCAGGGGCTTCAAGCTGTGAAGAGTTGGATATTAGAATTAGTGATTATTTTTGTGATGATTATTATAAATGTAGTGATGTTAGTGTAGTAGTTGGTAGTTTCAATTTCGAGGGAGGCATTGGAGAGATGGTTCTCCCTTCAACATGTGATTTTTTATGA 1173 0.474 MEWTRGLIIGRGSSATVYTASSAHSSTVSAVKTAELSPSNSEKLQREQRILSSLFSPHIVTYKGCNVTEENSIPWFNLFMEYMPFGTLSQEICRQGGRLREPAIVHYVRQVLQGLEYLHNKGVVHCDIKGSNILIGEDGAKIGDFGCAKLLNESPVAAIGGTPMFMAPEVARGEEQGYPADVWALGCTVVEMATGFAPWPNLEDPVTVLYRVAYSNDVPEIPSFLSEEAKDFLGKCFRRNPKERWTCSQLLKHPFLGQFSSNDKEIDQSNSCSPTSILEQGFWNSMEEAECASDPGNEVQIKSSDESPKGRIRRLALCSEDPIWELDDENWITTRGSEAGASSCEELDIRISDYFCDDYYKCSDVSVVVGSFNFEGGIGEMVLPSTCDFL* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00622 390 Gene3D Transferase(Phosphotransferase) domain 1 2 309 - -
Lapu5g00622 390 Pfam Protein kinase domain 8 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00622 390 SMART serkin_6 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00622 390 FunFam Mitogen-activated protein kinase kinase kinase 17 2 311 - -
Lapu5g00622 390 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Lapu5g00622 390 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 304 - -
Lapu5g00622 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Lapu5g00622 390 SUPERFAMILY Protein kinase-like (PK-like) 6 282 IPR011009 -
Lapu5g00622 390 CDD STKc_MAPKKK 2 256 - -
Lapu5g00622 390 ProSiteProfiles Protein kinase domain profile. 3 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00622 Lapu-Chr5 5780621 5781793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00622 1 286 MAP Kinase Kinase Kinase AT2G32510 53.872 1.35e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lapu5g00622 Pkinase 1.4e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00622 K20716 - gmx:100797801 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00622 5 5780621 5781793 Lapu6g01609 6 15969105 15970469 ECH
Lapu5g00622 5 5780621 5781793 Lapu5g00622 5 5780621 5781793 ECH
Lapu5g00622 5 5780621 5781793 Lapu3g00120 3 1463704 1464920 ECH
Lapu5g00622 5 5780621 5781793 Lapu11g00249 11 5447598 5448665 PCT