Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00621 ATGGCAAGAGGGGGTGGACTCTCCATTGATTCAGATCCAATTGGGAGCTTCTTCCTCCACAAGCCAGTAGTTCTCAACTCTTTCCCTGAAGACACCAACAGCATCAACAACGGCAGTGGCCAACACAAGTGGAAACTTGGTCCCAACATGGATGCCACAGTTAGCAGAAACAGGTCTCCATCATCTTCTCCAAACACCAACACCAACACCAACACCGCCTCCACCTCCACCATCCCCTTCCAAGTCAACCTTTCCTCTGATAACAAAAGGCCCCACATCGACGAGATGGACTTCTTCCCTAACAAGACCGATGATGATCATAACAACAACAACAACAACATAAACAACTTTGCCTCTGCCTCCACCTCTGCACCTCCCTCACTTGACCATCTTCTTCACACACATGATCATTCTTCCACTCCTGCTATCTTGGAATTGAAAGTAAACACTGGTTTGAATCTTCTCACCACCAACACTGGTAGTGATCATTCCATGGTGGACGATGAGACATCCCCTAATTCAGAAGATAAAAAAGCCAAGAGTGAGATGCTTGTTCTTCAAGCTGAGCTTGAGAGAATGAAGATGGAGAATCATAGGCTGAGGAACATGCTTGATCAGGTTAACACCAATTACAATGCCTTGCAGATGCATTTGGTGAGTTTGATGCAAGAACAGAAGGAGGACGAGGGTGAACAACAAGTGTTTGATGGAAAATTAGACGAGGAAAAACAAAGTGCGAATGGGGCCTTGGTGCCAAGACAATTTATGGATCTTGGGTTGGCTAGTAATGCTGATACTAATGAACCCTCCCATTCTTCCTCGGTGGGAAGAAGTCAGGATCTGTCAAAGTCACCGATAAATAATGAGGTAGCATCCAAGGAGTTTGAGACCAAGAAGAATGGAAGTGTTAGTGATGAAGGATTTGATCAAGACAAGAAGGAATTTGGAAGGGGAATTGAAAGAGAAGACAGTCCCTCAGAAGGGATTGCCGCTAATAGCAATGTTCCAAAGTTTAGTCCTCCAAGAAACGTTGATCAAGCTGAGGCTACCATGAGAAAGGCAAGAGTTTCTGTTAGAGCTCGATCAGAGGCACCCATGATCACTGATGGGTGTCAATGGCGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTCGAGCATATTATAGATGTACCATGGCAGCAGGTTGCCCAGTGAGAAAACAGGTGCAAAGGTGTGCTGAAGACCGAACAATACTGATCACAACGTATGAAGGGAATCACAACCACCCTTTGCCTCCAGCGGCTATGGCAATGGCACAAACAACTTCCTCAGCAGCTAGAATGCTGCTTTCAGGATCCATGTCAAGTGCTGATGGCCTAATGAATGCAAACTTCCTCACAAGGACACTCCTCCCTTGCTCTTCTAGCATGGCAACTATCTCAGCATCAGCTCCATTCCCAACTGTTACCTTGGATTTGACTCAGTCTCCAAACCCACTACAGTTCCCAAAGCCCCCAAACCAATTCCAAATCCCCTTCCCTGGTGTCCCTCAGAACTTTGCCAATTCCTCAGCCTCATTGCTGCCTCAGATATTTGGCCAGGCACTGTATAACCAGTCCAAGTTTTCTGGCCTCCAAATGTCTCAAGATGCAGACACTTCCCAGTTGAGTAACCAATCTCAACGGCCACCACCGCACCTTGCTGACACAGTTAGTGCTGCCACTGCTGCCATTGCAGCTGACCCCAACTTCACAGCAGCTTTGGCAGCAGCCATCACTTCTATTATTGGGGGTGCACAGCCAAACAACAATACCAATACTAATAATAATGGCACCACATCCATCAACACCAGCAATGCCAACATTACATCAAACAACAACAAATAA 1875 0.4651 MARGGGLSIDSDPIGSFFLHKPVVLNSFPEDTNSINNGSGQHKWKLGPNMDATVSRNRSPSSSPNTNTNTNTASTSTIPFQVNLSSDNKRPHIDEMDFFPNKTDDDHNNNNNNINNFASASTSAPPSLDHLLHTHDHSSTPAILELKVNTGLNLLTTNTGSDHSMVDDETSPNSEDKKAKSEMLVLQAELERMKMENHRLRNMLDQVNTNYNALQMHLVSLMQEQKEDEGEQQVFDGKLDEEKQSANGALVPRQFMDLGLASNADTNEPSHSSSVGRSQDLSKSPINNEVASKEFETKKNGSVSDEGFDQDKKEFGRGIEREDSPSEGIAANSNVPKFSPPRNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPKPPNQFQIPFPGVPQNFANSSASLLPQIFGQALYNQSKFSGLQMSQDADTSQLSNQSQRPPPHLADTVSAATAAIAADPNFTAALAAAITSIIGGAQPNNNTNTNNNGTTSINTSNANITSNNNK* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00621 624 MobiDBLite consensus disorder prediction 292 324 - -
Lapu5g00621 624 MobiDBLite consensus disorder prediction 32 77 - -
Lapu5g00621 624 MobiDBLite consensus disorder prediction 261 343 - -
Lapu5g00621 624 MobiDBLite consensus disorder prediction 544 565 - -
Lapu5g00621 624 MobiDBLite consensus disorder prediction 157 180 - -
Lapu5g00621 624 MobiDBLite consensus disorder prediction 101 120 - -
Lapu5g00621 624 Coils Coil 176 224 - -
Lapu5g00621 624 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 154 605 IPR044810 GO:0003700
Lapu5g00621 624 FunFam probable WRKY transcription factor 31 352 429 - -
Lapu5g00621 624 MobiDBLite consensus disorder prediction 52 77 - -
Lapu5g00621 624 Pfam WRKY DNA -binding domain 369 426 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu5g00621 624 MobiDBLite consensus disorder prediction 105 120 - -
Lapu5g00621 624 ProSiteProfiles WRKY domain profile. 362 428 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu5g00621 624 SUPERFAMILY WRKY DNA-binding domain 360 428 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu5g00621 624 MobiDBLite consensus disorder prediction 593 624 - -
Lapu5g00621 624 SMART WRKY_cls 367 427 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lapu5g00621 624 Gene3D WRKY domain 352 429 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lapu5g00621 624 MobiDBLite consensus disorder prediction 544 562 - -
Lapu5g00621 624 MobiDBLite consensus disorder prediction 261 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00621 Lapu-Chr5 5763225 5765877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00621 148 606 WRKY Transcription Factor Family AT1G62300 54.008 5.01e-137 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lapu5g00621 WRKY 3.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00621 - - gmx:100127384 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00621 5 5763225 5765877 Lapu6g01611 6 15994632 15997428 ECH
Lapu5g00621 5 5763225 5765877 Lapu5g00621 5 5763225 5765877 ECH
Lapu5g00621 5 5763225 5765877 Lapu11g00250 11 5461552 5464606 PCT