Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00608 ATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAATTTCTGCAACACCACTCTAGCGGTTAGTGTTCCATGCAGCAGTTTGCTCACCATAGTTACGGTTAGATGTGGACATTGTGCCAATCTGCTATCAGTTAATATGGGAGCATCACTTCAACCTTTTCCTTCTCAAGACACTCAGCATTTTTCTACCGTTGCTAAGTTACAGAGACAGCACCTAAGTGTCCAAGAAGCATGCAGCAAGGAACTGGGATCATCATCAAAATGCAAATCATTTGAGTCCGTAGACCATGAGCAACCTAGGATTCCTCCCATTCGTCCTCCAGAGAAGAGACAGCGTGTTCCTTCTGCTTATAATCGGTTCATTAAGGAGGAAATACAAAGAATCAAGGCTAGTAATCCAGATATCAGCCACAGGGAAGCTTTTAGCACAGCTGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAATAAGCAAGCAAAGTTGGACCAGGGAGATGGTACTCAAAAGTCTAACGGATTTTACTGA 561 0.4385 MSMDMMATERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQPFPSQDTQHFSTVAKLQRQHLSVQEACSKELGSSSKCKSFESVDHEQPRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDQGDGTQKSNGFY* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00608 186 CDD HMG-box_SF 117 153 - -
Lapu5g00608 186 FunFam Axial regulator YABBY 108 177 - -
Lapu5g00608 186 Pfam YABBY protein 7 163 IPR006780 GO:0007275
Lapu5g00608 186 SUPERFAMILY HMG-box 108 156 IPR036910 -
Lapu5g00608 186 PANTHER PROTEIN YABBY 6-RELATED 1 173 IPR006780 GO:0007275
Lapu5g00608 186 Gene3D High mobility group box domain 100 159 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00608 Lapu-Chr5 5594615 5604542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00608 1 186 C2C2-YABBY Transcription Factor Family AT1G08465 65.285 8.34e-82 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lapu5g00608 YABBY 5.4e-72 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00608 K25796 - gmx:100785458 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00608 5 5594615 5604542 Lapu11g00263 11 5571885 5579391 PCT