LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu5g00595	ATGGATGAAATTGAAATCCCTGCTCATTTTCTCTGCCCCATTTCCCTCCAACTCATGAGAGACCCTGTCACTGTTTGCACAGGAATCACCTATGATAGAGATAACATCGAGAAATGGTTGTTTTCATGCAAGAACAACACATGCCCCGTTACCAGGCAGTGCCTATTGAACCATGATCTCACCCCAAACCACACTCTACGCAGGCTGATCCAATCTTGGTGCACCCTCAATGCCTCACTTGGAGTTGAACGCATTCCAACTCCGAAGTCCCCAATCGACAGAACTCAGATTGTGAAACTCCTCACAGAAGCAAAGAGGTTCCCAGAGAAGCAACTCAAATGCCTCACAAGGCTTCGATCCATTGCCTTTGAGGGTCAAAGGAACAGAACCTGTTTAGAGTCTGCAGGAGTTGTTGAATTCTTAGCCTCTACCATGAAGTACAGGACAGAAGAAAACTCAACTGCTCTCAGTGAAGCATCTATCGAAGTCTTATTCCACCTTAACCTTTCCGAAGCTCAGCTTAAAGCTCTCATGTATAACGAGGGGTTTCAGTTTATTGAGTCATTGTTCCACGTGTTGAGGCTTGGAAACTACCAATCTAGAGCTTATGCAACCTTGCTACTTAGATCAGCATTGGAGGTGGCTGATCCTGTCCAATTGATCAGTGTCAAAACAGTACTGTTTGTGGAAATCCTGCGTGTGCTGCGTGATCAGATTTCACAACAGGCTTCAAAGGCTGCATTGAAGCTGATTGTGGAGCTCTTTCCGTGGGGCAGAAACAGGATCAAAGGGGTAGAGGGTGGTGCAGTTTCGGTCCTCATTGAGCTACTTCTTTGTACCTCGGAAAGAAGAACATGTGAACTCATTTTAATAGCTTTGGATCAACTTTGTGGGTGTGCAGAAGGGCGTGCAGAGTTGTTGAACCATGGTGCAGGAGTGGCCATTGTGTCCAAGAAAATTCTAAGGGTCTCTCTCGTGGCAAGTGATAGAGGGGTAAGAATTTTGGCCTCCATTTGTAGGTATTCCGCCAATGCAAGAGTTCTTCATGAAATGTTGCAGGTAGGGGCTGTGTCCAAGTTGTGCTTGGTGCTTCAAGTGAATTGCAGTTTCAAGACTAAAGAGAGGGCCAAGGAGATACTCAAATTGCACTCCTCAGTTTGGAAGAATTCTCCATGTATTCCTGTACCTTTGTTATCTTCCTTTCCTTGA	1209	0.4557	MDEIEIPAHFLCPISLQLMRDPVTVCTGITYDRDNIEKWLFSCKNNTCPVTRQCLLNHDLTPNHTLRRLIQSWCTLNASLGVERIPTPKSPIDRTQIVKLLTEAKRFPEKQLKCLTRLRSIAFEGQRNRTCLESAGVVEFLASTMKYRTEENSTALSEASIEVLFHLNLSEAQLKALMYNEGFQFIESLFHVLRLGNYQSRAYATLLLRSALEVADPVQLISVKTVLFVEILRVLRDQISQQASKAALKLIVELFPWGRNRIKGVEGGAVSVLIELLLCTSERRTCELILIALDQLCGCAEGRAELLNHGAGVAIVSKKILRVSLVASDRGVRILASICRYSANARVLHEMLQVGAVSKLCLVLQVNCSFKTKERAKEILKLHSSVWKNSPCIPVPLLSSFP*	403

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lapu5g00595	402	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	82	IPR013083	-
Lapu5g00595	402	Pfam	U-box domain	6	75	IPR003613	GO:0004842\|GO:0016567
Lapu5g00595	402	SUPERFAMILY	ARM repeat	98	225	IPR016024	-
Lapu5g00595	402	SUPERFAMILY	ARM repeat	187	376	IPR016024	-
Lapu5g00595	402	SMART	Ubox_2	9	73	IPR003613	GO:0004842\|GO:0016567
Lapu5g00595	402	CDD	RING-Ubox_PUB	7	60	IPR045210	-
Lapu5g00595	402	Gene3D	-	94	389	IPR011989	-
Lapu5g00595	402	ProSiteProfiles	U-box domain profile.	5	80	IPR003613	GO:0004842\|GO:0016567
Lapu5g00595	402	PANTHER	WDSAM1 PROTEIN	3	394	IPR045185	GO:0061630
Lapu5g00595	402	FunFam	RING-type E3 ubiquitin transferase	1	83	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu5g00595	Lapu-Chr5	5474423	5475631	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu5g00595	2	402	U-box Gene Family	AT2G35930	56.049	1.04e-163	464

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu5g00595	-		-	gmx:100778012	729.554

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu5g00595	5	5474423	5475631	Lapu5g00595	5	5474423	5475631	ECH
	Lapu5g00595	5	5474423	5475631	Lapu11g00271	11	5689193	5690395	PCT

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