Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00595 ATGGATGAAATTGAAATCCCTGCTCATTTTCTCTGCCCCATTTCCCTCCAACTCATGAGAGACCCTGTCACTGTTTGCACAGGAATCACCTATGATAGAGATAACATCGAGAAATGGTTGTTTTCATGCAAGAACAACACATGCCCCGTTACCAGGCAGTGCCTATTGAACCATGATCTCACCCCAAACCACACTCTACGCAGGCTGATCCAATCTTGGTGCACCCTCAATGCCTCACTTGGAGTTGAACGCATTCCAACTCCGAAGTCCCCAATCGACAGAACTCAGATTGTGAAACTCCTCACAGAAGCAAAGAGGTTCCCAGAGAAGCAACTCAAATGCCTCACAAGGCTTCGATCCATTGCCTTTGAGGGTCAAAGGAACAGAACCTGTTTAGAGTCTGCAGGAGTTGTTGAATTCTTAGCCTCTACCATGAAGTACAGGACAGAAGAAAACTCAACTGCTCTCAGTGAAGCATCTATCGAAGTCTTATTCCACCTTAACCTTTCCGAAGCTCAGCTTAAAGCTCTCATGTATAACGAGGGGTTTCAGTTTATTGAGTCATTGTTCCACGTGTTGAGGCTTGGAAACTACCAATCTAGAGCTTATGCAACCTTGCTACTTAGATCAGCATTGGAGGTGGCTGATCCTGTCCAATTGATCAGTGTCAAAACAGTACTGTTTGTGGAAATCCTGCGTGTGCTGCGTGATCAGATTTCACAACAGGCTTCAAAGGCTGCATTGAAGCTGATTGTGGAGCTCTTTCCGTGGGGCAGAAACAGGATCAAAGGGGTAGAGGGTGGTGCAGTTTCGGTCCTCATTGAGCTACTTCTTTGTACCTCGGAAAGAAGAACATGTGAACTCATTTTAATAGCTTTGGATCAACTTTGTGGGTGTGCAGAAGGGCGTGCAGAGTTGTTGAACCATGGTGCAGGAGTGGCCATTGTGTCCAAGAAAATTCTAAGGGTCTCTCTCGTGGCAAGTGATAGAGGGGTAAGAATTTTGGCCTCCATTTGTAGGTATTCCGCCAATGCAAGAGTTCTTCATGAAATGTTGCAGGTAGGGGCTGTGTCCAAGTTGTGCTTGGTGCTTCAAGTGAATTGCAGTTTCAAGACTAAAGAGAGGGCCAAGGAGATACTCAAATTGCACTCCTCAGTTTGGAAGAATTCTCCATGTATTCCTGTACCTTTGTTATCTTCCTTTCCTTGA 1209 0.4557 MDEIEIPAHFLCPISLQLMRDPVTVCTGITYDRDNIEKWLFSCKNNTCPVTRQCLLNHDLTPNHTLRRLIQSWCTLNASLGVERIPTPKSPIDRTQIVKLLTEAKRFPEKQLKCLTRLRSIAFEGQRNRTCLESAGVVEFLASTMKYRTEENSTALSEASIEVLFHLNLSEAQLKALMYNEGFQFIESLFHVLRLGNYQSRAYATLLLRSALEVADPVQLISVKTVLFVEILRVLRDQISQQASKAALKLIVELFPWGRNRIKGVEGGAVSVLIELLLCTSERRTCELILIALDQLCGCAEGRAELLNHGAGVAIVSKKILRVSLVASDRGVRILASICRYSANARVLHEMLQVGAVSKLCLVLQVNCSFKTKERAKEILKLHSSVWKNSPCIPVPLLSSFP* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00595 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Lapu5g00595 402 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Lapu5g00595 402 SUPERFAMILY ARM repeat 98 225 IPR016024 -
Lapu5g00595 402 SUPERFAMILY ARM repeat 187 376 IPR016024 -
Lapu5g00595 402 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Lapu5g00595 402 CDD RING-Ubox_PUB 7 60 IPR045210 -
Lapu5g00595 402 Gene3D - 94 389 IPR011989 -
Lapu5g00595 402 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Lapu5g00595 402 PANTHER WDSAM1 PROTEIN 3 394 IPR045185 GO:0061630
Lapu5g00595 402 FunFam RING-type E3 ubiquitin transferase 1 83 - -
Lapu5g00595 402 SUPERFAMILY RING/U-box 3 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00595 Lapu-Chr5 5474423 5475631 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00595 2 402 U-box Gene Family AT2G35930 56.049 1.04e-163 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00595 - - gmx:100778012 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00595 5 5474423 5475631 Lapu5g00595 5 5474423 5475631 ECH
Lapu5g00595 5 5474423 5475631 Lapu11g00271 11 5689193 5690395 PCT