Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00594 ATGACAGAAGTTGAAATTCCTCAGTTTTTCGTTTGTCCCATTTCGCTTCAGATTATGAAGGACCCTGTGACAACCGTTACGGGCATAACCTACGACAGAGAAAGCATAGAATACTGGTTGTTGAAAGCGAAAGATTGCACGTGTCCAATCACAAAGCAGCCATTGCCACGAAACTCAGAGTTCCTAACCCCAAACCACACGCTTCGGAGGCTAATCCAAGCGTGGTGTTCAGCGAACGAAGCATACGGTGTTGATCAAATTCCGACGCCGAAATCCCCTCTTAGCAATGCCAACGTTGAGAAGCTCGTGAAGGATCTCGAAGTTCCTCTACGCTTCCAAAACGCAATGGAGAAATTGCATAACCTTGCAGTAGAGAACGAGAGGAACAGAAGGTGTATGGCTTCAGCGGGCGTAGCAGAAGCTATGGTGCACGTGATAACAAAGAGTTTCACGCAGGACAAAACGACTTCGTGCATTGAGGAGGCTCTGAGGATTCTTCGTTTGCTTTGGAGCAGTGCCAATGTGGCGGATAATAACTGCATGAAGCGGTTGGTGGGTCGGAACTCTGAGTTTCTGAACTCGTTGACTTGGGTTTTGCAGCTTCAAACTAAGAGCAACGTCAAGGTAATAAACGAAGCAATGCCTATATTGAAATTGACAATTGAAGCCGAAGATTCAACCCCTTTGGGGAACTTAGGGCTTGAATTATTCAGAGTGGTTGTGAGTGTGATGAAATATAGAGAAGTCTCTCAGCAAGCAATTAAATCTGCATTGTATGTGCTCATTGAAACCTGTCCTTTGGGGAGAAATAGAACCAAGATAGTGGAAGCAGGTGCGGTGGAGGAGCTCATTGAACTTGCACTTGAAAAACCAGAAAAGAGTCTAACTGAACTCGTGTTCATCCTTTTGGCGCACCTGTGTTCTTGTGCTGATGGGAGAGAACAGTTTCTGCAGCATGCTGCAGGCATTGCTGTGGTTTCCAAAAGGATCCTTAGGGTTTCTCCAGCCACCGATGATCGAGCTCTTCATATATTTTCCTTGATTTCAAAGTTCTCAGCGTCTAATGAAGTCGTCCAAGAGATGCTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGCTACAAGCAGATTGTGCTTCCTATTTGAAAGAAAAGGCAAGAGCTGTACTTAGGTTACACTCCAAAACATGGAATAATTCTCCCTGTATTCAAGTATATTTGTTAACCAGATTCCAAAGGTGA 1242 0.4501 MTEVEIPQFFVCPISLQIMKDPVTTVTGITYDRESIEYWLLKAKDCTCPITKQPLPRNSEFLTPNHTLRRLIQAWCSANEAYGVDQIPTPKSPLSNANVEKLVKDLEVPLRFQNAMEKLHNLAVENERNRRCMASAGVAEAMVHVITKSFTQDKTTSCIEEALRILRLLWSSANVADNNCMKRLVGRNSEFLNSLTWVLQLQTKSNVKVINEAMPILKLTIEAEDSTPLGNLGLELFRVVVSVMKYREVSQQAIKSALYVLIETCPLGRNRTKIVEAGAVEELIELALEKPEKSLTELVFILLAHLCSCADGREQFLQHAAGIAVVSKRILRVSPATDDRALHIFSLISKFSASNEVVQEMLRVGAVSKLCMVLQADCASYLKEKARAVLRLHSKTWNNSPCIQVYLLTRFQR* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00594 413 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Lapu5g00594 413 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Lapu5g00594 413 SUPERFAMILY ARM repeat 113 396 IPR016024 -
Lapu5g00594 413 Gene3D - 234 400 IPR011989 -
Lapu5g00594 413 Gene3D - 99 225 IPR011989 -
Lapu5g00594 413 PANTHER WDSAM1 PROTEIN 3 404 IPR045185 GO:0061630
Lapu5g00594 413 CDD RING-Ubox_PUB 7 55 IPR045210 -
Lapu5g00594 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Lapu5g00594 413 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Lapu5g00594 413 SUPERFAMILY RING/U-box 3 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00594 Lapu-Chr5 5465336 5467029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00594 3 403 U-box Gene Family AT2G35930 41.235 1.11e-104 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00594 - - gmx:100778547 717.227