Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00593 ATGGCGACGTACTTTCATGGAAGCACTTCGGGGATTCAATCTTCTGCAGATGGCTTGCAAACGCTTTACCTTATGAACCCATCTTACGTACCTTATGCTGACGCGCCGCACCACCCAACGCTTCTCGTCAATCCCAACGCTACCAACGCGCTCAACCTTGCAAATCTAACCCACGCGCCGCCGGTGTCACCTTCCCCCAACCAGCAGCAGCACGTGATTCACGGCGTGACAAACATCCTCGGATCAGGAAATTCCGATGAACACGCTCACACCCGACCGTCTTTGTTCGGGGAAAACATCGCCGCCTTCCACGGCTTCTCCGGCGGCGCCTCATCCGCCGCCCCTCGGGTTCATTATAACCTCTGGGGTTCGGGGGTTGATCAACCTGCAACGCCTTCTAGTAGCTCTGGCGGCGGCGGTTTCCGGCGCCCGAGTCAACAGGGGTTGTCTCTCAGCCTTTCGTCGCAGCAAACGAATTTCAGGTCTGTTTCCGGGGAGCTTGAGGTTGCTGCACACGGCCACGTCGCCGGAACTGGGAACTCGCCGACGTCGGCGGCGTCGACAGGAGTTTCCGGCCTGATTTTGGGGTCCAGATATCTGAAAGCAGCGCAGGAGCTTCTGGATGAAGTTGTTAACGTAGGAAAAGGAATCTACAAAGAGGAAAAATTCTCAGATAAGGTGAAAGCGAATAGAGAATCTACTAATTCAGGTGCTGCTGCTGGTTCAAGTGGTGGAGGAGAAAACAGTGCAGGAAAACAAGTAGTTGAACTCAGCACAGCTCAGAGACAGGAACTTCAGATGAAGAAGTCCAAGCTTGTCAACATGCTCGATGAGGTGGAACAAAGGTACAGACAATATCACCACCAAATGCAAATTGTGGTATCATCATTTGAGCAAGCCGCGGGTTATGGGGCGGCAAAATCTTACACTGCCCTTGCCCTAAAGACTATCTCAAAGCAATTCCGGTGCCTTAAAGATGCAATCTCTGCGCAAATCAAAGCCACGAGCAAGACATTGGGTGAAGATGATTGCTTAGGAGTGAAAGTAGAAGGGTCGAGGCTTAGGTATGTTGACCACCATCTTAGGCAACAAAGGGCACTGCAGCAGCTAGGAATGATTCAGCCCAATGCATGGAGGCCACAAAGAGGCTTGCCAGAACGAGCCGTTTCCATTCTTCGCGCTTGGCTTTTTGAGCATTTTCTTCACCCCTATCCAAAGGACTCAGATAAAGTCATGCTAGCTAAACAAACTGGACTGGCTAGAAGCCAGGTGTCAAACTGGTTTATCAATGCCCGTGTTCGGCTGTGGAAGCCAATGGTTGAAGAAATGTACCTGGAAGAAATGAAGGATCATGAACAAGCTAACGGCTCAGAAAACACCAGATCGAAAGAACTGAGCAAGGAGTTGGGCTCAAAAGCAAATGTTGCACCAGAATCAGGTGCCATTAAACTAGATAATCTTCAACCAAAACAAGACAGTTTCAACAACCAAAACACTTCTCAAACTGAAATCTCAACAAACTCTTCAATGTCACCCATCGGAGGGTCCCTTCAATCGCAATCTGGTTTCCATCTTGCAGGATCTTCTGATATGCAAAGGAGTCCGAACAAACAAAGAAGTTCGGAAATGCAAAACTCTCCAAGTAGTATCCTCTCTGTGGACGTGGAAATGAAGCATAATGGTGAACATGCAAATACTAGAGAAGCCAACACAAAGTTTGGTATTGAAAGGCACCACAAAGATGGATACCCTTTGATGAGTGGCAATGCAAACCATGCTGGGGGGTTTGGAGCGTTCACAATGGAAGACATTGGAAACAGATTCAACGTCACTACTGAGCAACTGGCTTCAAGGTTCCATGGAAATGGTGTTTCTCTCACACTAGGTCTTCCCCACAATGAAAATCTTTCTATCTCAGGAACTCAAAATGGATTTCTCTCACCGAATATTCATTTAGGAAGGAGACTTGAGATGGGAACGAATGGGAATGAGTTTTGTGCTATTAACACTCCACCTTCGTCTCACTCAGGAACAACTTATGAGAGCATTGACATTCAAAACAGAAAGAGGTTTGTTGCTCAGTTATTACCCGATTTCGTGGCCTAA 2106 0.481 MATYFHGSTSGIQSSADGLQTLYLMNPSYVPYADAPHHPTLLVNPNATNALNLANLTHAPPVSPSPNQQQHVIHGVTNILGSGNSDEHAHTRPSLFGENIAAFHGFSGGASSAAPRVHYNLWGSGVDQPATPSSSSGGGGFRRPSQQGLSLSLSSQQTNFRSVSGELEVAAHGHVAGTGNSPTSAASTGVSGLILGSRYLKAAQELLDEVVNVGKGIYKEEKFSDKVKANRESTNSGAAAGSSGGGENSAGKQVVELSTAQRQELQMKKSKLVNMLDEVEQRYRQYHHQMQIVVSSFEQAAGYGAAKSYTALALKTISKQFRCLKDAISAQIKATSKTLGEDDCLGVKVEGSRLRYVDHHLRQQRALQQLGMIQPNAWRPQRGLPERAVSILRAWLFEHFLHPYPKDSDKVMLAKQTGLARSQVSNWFINARVRLWKPMVEEMYLEEMKDHEQANGSENTRSKELSKELGSKANVAPESGAIKLDNLQPKQDSFNNQNTSQTEISTNSSMSPIGGSLQSQSGFHLAGSSDMQRSPNKQRSSEMQNSPSSILSVDVEMKHNGEHANTREANTKFGIERHHKDGYPLMSGNANHAGGFGAFTMEDIGNRFNVTTEQLASRFHGNGVSLTLGLPHNENLSISGTQNGFLSPNIHLGRRLEMGTNGNEFCAINTPPSSHSGTTYESIDIQNRKRFVAQLLPDFVA* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00593 701 CDD homeodomain 378 439 IPR001356 GO:0003677
Lapu5g00593 701 MobiDBLite consensus disorder prediction 486 548 - -
Lapu5g00593 701 MobiDBLite consensus disorder prediction 450 473 - -
Lapu5g00593 701 MobiDBLite consensus disorder prediction 450 468 - -
Lapu5g00593 701 SMART HOX_1 378 442 IPR001356 GO:0003677
Lapu5g00593 701 Pfam Homeobox KN domain 395 434 IPR008422 GO:0003677|GO:0006355
Lapu5g00593 701 MobiDBLite consensus disorder prediction 230 252 - -
Lapu5g00593 701 Coils Coil 262 289 - -
Lapu5g00593 701 MobiDBLite consensus disorder prediction 227 252 - -
Lapu5g00593 701 SMART prehox3 188 330 IPR006563 -
Lapu5g00593 701 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 128 462 - -
Lapu5g00593 701 FunFam BEL1-like homeodomain protein 9 381 443 - -
Lapu5g00593 701 ProSiteProfiles 'Homeobox' domain profile. 375 438 IPR001356 GO:0003677
Lapu5g00593 701 MobiDBLite consensus disorder prediction 485 548 - -
Lapu5g00593 701 Gene3D - 381 460 - -
Lapu5g00593 701 Pfam Associated with HOX 194 329 IPR006563 -
Lapu5g00593 701 SUPERFAMILY Homeodomain-like 379 445 IPR009057 -
Lapu5g00593 701 MobiDBLite consensus disorder prediction 128 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00593 Lapu-Chr5 5454901 5459918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00593 1 701 Homeobox Transcription Factor Family AT2G35940 43.725 2.37e-143 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lapu5g00593 POX 1.8e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00593 - - gmx:100779075 1138.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00593 5 5454901 5459918 Lapu5g00593 5 5454901 5459918 ECH
Lapu5g00593 5 5454901 5459918 Lapu11g00274 11 5727800 5733187 PCT