Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00589 ATGCATAGTTATAGGCTAACCATGGAAGGTGTTCAGATAGAAGCAGTCTTCATCTTGTTTTGTTTTTGTCTTATCATTACAATGAATTATGGCGCTACAAACCCAGATGATGTCAAAGTTTTGAATGATTTCAGAAAAGGGTTGGAGAATCCAGAGCTTTTGAAGTGGCCGGAGGAGGGAGATGATCCCTGTGGTCCTCCTTTATGGCCTTTTGTTTACTGTTCTGGAGATAGAGTAAATCAGATTCAGGCTAAGAATCTTGGTCTTAGAGGGTCATTGCCTCAAAACTTTAACCAACTCTCAGAACTCTACAATTTGGGTCTCCAACGCAACAACCTTAGCGGGATGTTGCCTACATTTAGTGGATTATCCAAATTGGAATTTGCTTTCTTGGATTACAATAAATTTGATGCAATCCCATCTGATTTCTTCAATGGACTTAGCAGCCTTAGGGTCTTGTCTTTGGAAGAAAATCCACTGAATATGAGTGGTGGTTGGTTGTTTCCCCCGGATTTAGAAAAATCAGTACAGTTAACCAACCTTTCTCTGGTGCAATGTAACTTGGTTGGACCATTACCGGATTTTCTGGGCAAATTGCCATCTCTCACAAATCTGAGGCTTTCAGGTAACAAGCTATCTGGTGCCATACCAGCAAGTTTTGCACAATCTTCAATCCAGGTTTTGTGGTTGAATGATCAAGAAGGCGGTGGGTTGAGTGGTCCTATTGATGTTATTGCTTCAATGACTTTCCTTAGACAGGTTTGGCTGCATGGAAACAAGTTCACTGGGCCAATTCCTCAGAATATTGGAAATCTAACTTCCTTGCAGGAACTCAATCTCAATAGCAATCAACTTGTTGGCTTGATTCCAAGGTCCCTAGCACTTATGGACCTTGATATCCTTGTGTTAAATAATAACATGCTAATGGGTCCAATACCGAAATTTAAGGCTACCAATGTTTCTTATGATTACAATTTATTTTGTCAAAATGAGCCTGGGCTTGAATGTGCCCCTCATGTTACTACTTTGCTGGATTTTCTAGATAAGCTGAATTACCCTTCATTTCTCATTTCTGATTGGTCGGGTGATGAACCATGCACACGCAGCACAGGGTCATGGTTTGGATTGAGCTGCAATTCCGACTCAGAGATATCTATTATCAATCTACCTAGACACAAGCTAAATGGTACTCTTAGTCCCTCACTTGCTAAGTTAGATTCACTCCGTCTAATTAGGCTTGAAGGAAACAACATAACCGGCTCTGTTCCCACTAGTTTCACCAAATTAACATCTTTGGAGGTGTTGGATTTAAGTCATAACAATCTTCAGCCTCCATTTCCAAATTTTCACGATGATGTGAAGATTAATATTACGGGTAATCCTCTTCTCCTGAATCAAACTGGAGGAAGTCCCAGTCCTATGCCTATTAACAGCCCACCTTCACCGCAAAATCCATCAGAGCCTCCATCCTCTCATAAGCCACCTGTTCAAGATCAGCGTTCAAGATCTAATCAATCCAAGCCAAATGACTTGAAAAGATTCAGAACAGCAGCAATAGTGGCTGGAGTTTTAGTGTTTACAGTTGTAGCTCTTTTAGTTGTTTATCTCTTCCTATGTTGTAGGAAGAACAAAAAAGCCTCCTTGGATGCTCCAAGTTCCGTTGTGATTCACCCTCGCAATCCATCTGATCCAGACAACATAGTTAAAATTGCAGTTTCAAACGCCACTGGAAGTTTGTCAACTAAGACTGGTACAAGTTCTCTGAGTAACATCAGTGGTGAAACTCAAAACTCTCACATAATTGAGGATGGCAACCTTGTCATCTCTATACAAGTGCTACGAAAGGTTACGAATGACTTTGCTTCAGAAAATGAACTAGGACGTGGAGGGTTTGGGACTGTTTACAAGGGGGAACTTGAAGATGGGACAAAAATAGCAGTGAAGAGAATGGAGCACGGGGTTATTAGCAGTAAGGCAATAGACGAGTTTCAAGCCGAAATAGCTGTTCTTTCCAAGGTACGGCACCGCCATCTGGTATCCTTGTTGGGGTATTCCATTGAAGGCAATGAAAGACTTTTGGTTTATGAATATATGTCTCTTGGAGCTCTAAGCCAGCATCTTTTTCATTGGAAAAACTTGAATTTGGAGCCTTTGTCTTGGTCAAAGAGGCTTGCAATAGCACTAGATGTTGCTAGAGGGATAGAATACCTTCATAGTCTTGCCCGTCAGACTTTTATTCATCGAGATCTTAAGTCTTCTAATATCTTATTGGGTGATGATTTCCGAGCTAAAGTTTCAGATTTTGGTTTGGTGAAGCATGCCCCGGACAGTGAGAAGTCTGTAGTTACCAAGCTTGCTGGGACATTCGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACAAAAGTTGATGTGTTCAGCTACGGTGTGGTTTTGATGGAACTTCTGACTGGACTTGTGGCACTCGATGAGAGCCGGCCAGAGGAGAGCCGGTACTTGGCTGAATGGTTTTGGCGGATTAAATCAAGCAAGGAGAAGCTTATGGCTGCCATTGATCCAGTTGTGGAAGCATCCGAAGAAACTTTTGAGAGCATAACTATTGTAGCTGAACTTGCTGGACATTGCACTGCAAGGGAAGCACATCATAGGCCAGATATGGGTCATGCAGTCAATGTCCTGGCAGCATTAGTGGAAAAATGGCAACCAGTTGATGATGAATTAGACTGCTACTCTGGCATTGACTACACAAGACCACTTCCTCAGATGTTGAAGATTTGGAAGGAAGCAGAAAGCAAAGAGTTCAGCTATACTTCTAGTCTTGACAACAGCAGAAGTAGTATTGCAGCCAGGCCTACTGGGTTTGCGGACTCTTTCACTTCCGCTGATGCAAGATGA 2904 0.4218 MHSYRLTMEGVQIEAVFILFCFCLIITMNYGATNPDDVKVLNDFRKGLENPELLKWPEEGDDPCGPPLWPFVYCSGDRVNQIQAKNLGLRGSLPQNFNQLSELYNLGLQRNNLSGMLPTFSGLSKLEFAFLDYNKFDAIPSDFFNGLSSLRVLSLEENPLNMSGGWLFPPDLEKSVQLTNLSLVQCNLVGPLPDFLGKLPSLTNLRLSGNKLSGAIPASFAQSSIQVLWLNDQEGGGLSGPIDVIASMTFLRQVWLHGNKFTGPIPQNIGNLTSLQELNLNSNQLVGLIPRSLALMDLDILVLNNNMLMGPIPKFKATNVSYDYNLFCQNEPGLECAPHVTTLLDFLDKLNYPSFLISDWSGDEPCTRSTGSWFGLSCNSDSEISIINLPRHKLNGTLSPSLAKLDSLRLIRLEGNNITGSVPTSFTKLTSLEVLDLSHNNLQPPFPNFHDDVKINITGNPLLLNQTGGSPSPMPINSPPSPQNPSEPPSSHKPPVQDQRSRSNQSKPNDLKRFRTAAIVAGVLVFTVVALLVVYLFLCCRKNKKASLDAPSSVVIHPRNPSDPDNIVKIAVSNATGSLSTKTGTSSLSNISGETQNSHIIEDGNLVISIQVLRKVTNDFASENELGRGGFGTVYKGELEDGTKIAVKRMEHGVISSKAIDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMSLGALSQHLFHWKNLNLEPLSWSKRLAIALDVARGIEYLHSLARQTFIHRDLKSSNILLGDDFRAKVSDFGLVKHAPDSEKSVVTKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLVALDESRPEESRYLAEWFWRIKSSKEKLMAAIDPVVEASEETFESITIVAELAGHCTAREAHHRPDMGHAVNVLAALVEKWQPVDDELDCYSGIDYTRPLPQMLKIWKEAESKEFSYTSSLDNSRSSIAARPTGFADSFTSADAR* 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00589 967 FunFam Receptor-like kinase TMK4 35 333 - -
Lapu5g00589 967 FunFam Leucine-rich repeat receptor-like kinase 338 466 - -
Lapu5g00589 967 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Lapu5g00589 967 Pfam Leucine rich repeat 401 442 IPR001611 GO:0005515
Lapu5g00589 967 ProSiteProfiles Protein kinase domain profile. 620 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00589 967 MobiDBLite consensus disorder prediction 460 509 - -
Lapu5g00589 967 SMART LRR_typ_2 147 170 IPR003591 -
Lapu5g00589 967 SMART LRR_typ_2 123 146 IPR003591 -
Lapu5g00589 967 SMART LRR_typ_2 429 451 IPR003591 -
Lapu5g00589 967 SMART LRR_typ_2 100 122 IPR003591 -
Lapu5g00589 967 SMART LRR_typ_2 405 428 IPR003591 -
Lapu5g00589 967 SMART LRR_typ_2 199 222 IPR003591 -
Lapu5g00589 967 SMART LRR_typ_2 272 295 IPR003591 -
Lapu5g00589 967 SUPERFAMILY L domain-like 73 463 - -
Lapu5g00589 967 CDD STKc_IRAK 626 896 - -
Lapu5g00589 967 Gene3D Phosphorylase Kinase; domain 1 581 697 - -
Lapu5g00589 967 SMART serkin_6 620 899 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00589 967 SUPERFAMILY Protein kinase-like (PK-like) 598 896 IPR011009 -
Lapu5g00589 967 MobiDBLite consensus disorder prediction 473 492 - -
Lapu5g00589 967 Gene3D Ribonuclease Inhibitor 338 466 IPR032675 -
Lapu5g00589 967 PRINTS Leucine-rich repeat signature 429 442 - -
Lapu5g00589 967 PRINTS Leucine-rich repeat signature 202 215 - -
Lapu5g00589 967 FunFam receptor protein kinase TMK1 698 915 - -
Lapu5g00589 967 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672|GO:0006468
Lapu5g00589 967 Gene3D Ribonuclease Inhibitor 35 333 IPR032675 -
Lapu5g00589 967 Pfam Protein tyrosine and serine/threonine kinase 623 891 IPR001245 GO:0004672|GO:0006468
Lapu5g00589 967 Gene3D Transferase(Phosphotransferase) domain 1 698 913 - -
Lapu5g00589 967 PANTHER OSJNBA0070M12.3 PROTEIN 17 967 - -
Lapu5g00589 967 Pfam Leucine rich repeat N-terminal domain 341 379 IPR013210 -
Lapu5g00589 967 Pfam Leucine rich repeat N-terminal domain 35 75 IPR013210 -
Lapu5g00589 967 FunFam receptor protein kinase TMK1 582 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00589 Lapu-Chr5 5376221 5380217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00589 91 914 Receptor kinase-like Gene Family AT1G55610 30.769 4.88e-83 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Lapu5g00589 PK_Tyr_Ser-Thr 6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00589 - - gmx:100785090 1644.4