Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00585 ATGGAGTCGCGGATGGATCACTACGAGATCATGGAGCAGATCGGTCGCGGAGCGTTTGGCGCCGCGATTCTGGTGAACAACAAAGCGGAGAAGAAGAAGTACGTCTTGAAGAAAATCAGGCTCGCGCGGCAGACTGAACGATGCAGAAGATCTGCTCATCAGGAGATGGCGCTTATTGCTCGAATTCAGCACCCTTACATTGTGGAATTCAAAGAGGCTTGGGTTGAGAAGGGTTGCTATGTTTGCATTGTTACTGGATATTGTGAAGGTGGAGACATGGCTGCATTGATGAAAAAGTCAAATGGGGTTTACTTTCCTGAGGAGAAACTGTGCAAGTGGTTTACTCAACTACTCTTGGCAGTGGAATACCTGCATTCCAATTTTGTTTTACATCGCGACCTAAAGTGTTCCAATATCTTTCTTACCAAGGATCAAGATGTTCGCCTTGGTGATTTTGGGCTTGCCAAGACACTAAAAGCGGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAACTATATGTGTCCTGAACTGCTTGCAGATATTCCTTATGGATTCAAATCTGATATTTGGTCACTAGGGTGTTGTATATATGAGATGGCTGCTCATCGCCCAGCTTTTAAAGCTTTTGATATGGCAGGGTTGATTAGCAAGATAAATCGTTCCTCTATTGGCCCTCTGCCTCCCTGTTATTCCCCATCTTTGAAAACACTGATAAAGGGCATGCTGAGAAAAAATCCTGAGTATCGTCCAACAGCAACTGAAGTCTTAAAGCATCCTTATTTGTTACCTTATGTTGATCAATATCGCTCATCTTTCTGTACTCCAACAGCCAGAACCCCTGAAAAGCCAATTTCTGCTATTCATTATCCTCGGAAAAATAAGCCAGAAGGTCAAAACAGTAGTAGTTCAAGTACCGAGAAAGATAGTTTGATGTCAAATACGAAAAACACTGGAAATGCAGTTCAGAAGTGTGATAGCGGAAGTATTGAACTAGACATGACATCAATTGAGGATGATGGCTCTGAGCAACTCTTGCCTGATGAAGAAGGAAATAGCTCGATGAAAGTCAATGCCGAAACTTTTGACCAGGAGGTGACAAAGCAATTTAATAATGAACACCATTCTAATGTTGTATCTAAGCCAACGATAGAAATTAAGAATGTAGTGACAACGTTAAGAAATAGAAAACTTAGAGAGACAAGTTCTCCAATGAGAGGCAATCGCATAAAGGGTGGTGGTGTGTTGACGTATAAAATGAATACAGAGACATTGTCCAAATTGCCCAAACCCAATTTTGGTGCTTCTGATTTGAAACCGAATTCAGAGGTGCCGACTATTGCACCTCCAAAAGCAACTCCTGAACTTGCAAAAAGATTGCAAGGATCACATACATCAAAGCATCAGTTACCAATGATTGAATCCACACCAAAAACTAAACCTCGACATACTGTGATTCCACCACTGGGTCCTGCCAAACAAGTAGAAGGTCGTGAAGTTCCTGCTAAGCCAAGGCAAAAGACTCCTCCAAGCTTACTTAAACCACCTTCTTTTCCAGGACATGTGAGGCAAACTGGGTTTGATGTTACAAATGCAGCAAATAATACTGCAAAGTCAAGTCCAAACAAAATGGTTCGGGAGCCTAAGATCAGCCATAACCAGTTGACCAACAGTCATCTACCACATGTTTCTAGAGAGATTACTCGAGAGCCTTTAAAGACTTTTGAAAGCAGTTCCAAAGGAATGCAAACAGACAGCAGCAATTCTGTCTCATCTTCTTTCTCTATTCAAGGATTCGAACTTTCTGATTTTGCAACCACTTTTATTGACTTAAGTGAAACAACACTTCCTGTTCGAGAGAGTTTAAACCACGCTGAAAATGTGGAATCAGGAGCAGATAGCAGTTCACCTGCATCCTATTCGCATTTAGAGATGTCTGAACAACTGTCTGAGGAAACCCCTGCGATTACACCACATTTTCAAAAAATAATTACTAGTGAGGAGAAAGTATGTCCCAGTTTATCTCCAGATCATTTAGTTCAAGATGCTGAGGTAATGTTTGCTTCTGATGATAGTTTTCCCATAAATCAGAGGACTACATCTGCTGGCTCCAGGTGTGAAAATACATCTGTAGAATCCTCTGCTGAAATCACAGAAGAAATCAAAGATGTTGAAGATATTTCCAAGGAGATGTCTTCATCCAAGGCTCCCCAACAGCCACTCCCCATTTCTGGAGAAAAGTCTGTTTGTGAAGAATTTGGTCCAGCAAGCAAGCCAAATAATAGGCTTGATAATGTTAGCAAGCCAAAACTTATGTGCATCTCCAGTGGCGATGACAAATTTATGGTGAGGGGAAGACTGTCATCAGCGGATGAAACTGCTCCTTTGATTATCTCTAATAAAATTTTAGGCCAGAAAGTTTTGCAAGAGGAGAAAGGAACGGTTCCGGCACTAGAAAGGCCAGCTGTTGGCCATTTTCCTCCTGCTTTTGATGATGTCATTCATGTCATACGCCATAGCAGTTATCGTGTGGGGACTGAGCAGCCAGTGAAGGATTCCGTGGAGATGGGAGTTCAAAATGTAGATGTTGGTAAGTTTATCAACATTGTAAGGGATGATATAGAAATGAGAAACATGAGCACTCCTTTGACCCTAAAATCTTCTAATTGCTCAGATAGTATTGACTTGAAGTCAAATATTTCTGAAAATATGGAAATTAGAAACTTGAGTAATCCTCATAACTCAAAATCTTCAAGTTGCACTGACTCCTTGAGCATGAAATCAAGTTGTTCTGATCATCCTGGTGTTAGGGAACAAGATATGAAAAATCCTGATTCTCTTGTTTCAAAATCTGATTCCCCTGAGTATTCAAGATACACTCCTACAGCTGAAGAGGAACCACCAGCAAAGGAAATTTTGGATGTTAAATCTTCCAGGCAGAGAGCTGAGGCTCTTGAAGGACTGTTAGAATTATCAGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTCTGAAGCCTTTTGGAAAAGATAAAGTCTCCCCAAGGGAGACCGCCATTTGGTTAGCCAAGAGTTTAAAAGGATTGATGATTGACGAAAGTGGAGGGCGCAGTTAA 3126 0.4146 MESRMDHYEIMEQIGRGAFGAAILVNNKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAALMKKSNGVYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEYRPTATEVLKHPYLLPYVDQYRSSFCTPTARTPEKPISAIHYPRKNKPEGQNSSSSSTEKDSLMSNTKNTGNAVQKCDSGSIELDMTSIEDDGSEQLLPDEEGNSSMKVNAETFDQEVTKQFNNEHHSNVVSKPTIEIKNVVTTLRNRKLRETSSPMRGNRIKGGGVLTYKMNTETLSKLPKPNFGASDLKPNSEVPTIAPPKATPELAKRLQGSHTSKHQLPMIESTPKTKPRHTVIPPLGPAKQVEGREVPAKPRQKTPPSLLKPPSFPGHVRQTGFDVTNAANNTAKSSPNKMVREPKISHNQLTNSHLPHVSREITREPLKTFESSSKGMQTDSSNSVSSSFSIQGFELSDFATTFIDLSETTLPVRESLNHAENVESGADSSSPASYSHLEMSEQLSEETPAITPHFQKIITSEEKVCPSLSPDHLVQDAEVMFASDDSFPINQRTTSAGSRCENTSVESSAEITEEIKDVEDISKEMSSSKAPQQPLPISGEKSVCEEFGPASKPNNRLDNVSKPKLMCISSGDDKFMVRGRLSSADETAPLIISNKILGQKVLQEEKGTVPALERPAVGHFPPAFDDVIHVIRHSSYRVGTEQPVKDSVEMGVQNVDVGKFINIVRDDIEMRNMSTPLTLKSSNCSDSIDLKSNISENMEIRNLSNPHNSKSSSCTDSLSMKSSCSDHPGVREQDMKNPDSLVSKSDSPEYSRYTPTAEEEPPAKEILDVKSSRQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGLMIDESGGRS* 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00585 1041 MobiDBLite consensus disorder prediction 625 652 - -
Lapu5g00585 1041 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Lapu5g00585 1041 MobiDBLite consensus disorder prediction 907 969 - -
Lapu5g00585 1041 MobiDBLite consensus disorder prediction 277 323 - -
Lapu5g00585 1041 SUPERFAMILY Protein kinase-like (PK-like) 4 313 IPR011009 -
Lapu5g00585 1041 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Lapu5g00585 1041 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00585 1041 MobiDBLite consensus disorder prediction 295 323 - -
Lapu5g00585 1041 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00585 1041 MobiDBLite consensus disorder prediction 427 449 - -
Lapu5g00585 1041 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Lapu5g00585 1041 CDD STKc_Nek 7 262 - -
Lapu5g00585 1041 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Lapu5g00585 1041 MobiDBLite consensus disorder prediction 474 520 - -
Lapu5g00585 1041 MobiDBLite consensus disorder prediction 907 932 - -
Lapu5g00585 1041 Gene3D Transferase(Phosphotransferase) domain 1 90 332 - -
Lapu5g00585 1041 FunFam Serine/threonine-protein kinase Nek5 90 335 - -
Lapu5g00585 1041 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 990 - -
Lapu5g00585 1041 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00585 Lapu-Chr5 5351406 5360666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00585 14 262 MAP Kinase Kinase Kinase AT1G53570 31.890 1.41e-36 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lapu5g00585 Pkinase 4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00585 K08857 - gmx:100780141 1691.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00585 5 5351406 5360666 Lapu5g00585 5 5351406 5360666 ECH
Lapu5g00585 5 5351406 5360666 Lapu11g00280 11 5880432 5889749 PCT