Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00577 ATGTCCATCGCCGCTTCTTCCATGTTTCCTGGCTTTAGATTCTGCCCCACCGATGAGGAGTTGATTTCTTATTACCTTAGGAAGAAGCTGGATGGCCATGAAGAGAGTGTTCAAGTCATTTCTGAGGTTGAGCTCTGTAAATACGAGCCTTGGGATTTACCTGCCAAATCGTTCATTCGATCAGATAACGAATGGTTTTTCTTCTCTCCCCGTGGAAGAAAGTACCCCAATGGTTCACAAAGTAAAAGGGCTACTGAATGTGGATATTGGAAGGCCACTGGCAAAGAGCGTAATGTAAAGTCAGGTTCTGATGTTATAGGAACGAAGAGGACTTTGGTGTTCCACTTGGGGCGTGCACCTAAAGGGGAGAGGACTGAATGGATTATGCATGAGTATTGCATCAATGACAAGTCTCAGGATTCTTTGGTGATTTGTCGGCTGAAGAGGAACACAGAGTTCCGTTTGAGTGATCATTCGAATAGAGCTTCTTCAAGTCAAAGGCATCCCGTGAATTCACACGAAAGTGGTTGTGCCATCTCAGAAGGTGGTGGTATAGATCAAAGGGATGTTTGTGAGCAAGACAAAGAGGTAGGATGTAGCTCCAAGAGGAGCAGTAGCAGTTACGGTTCTCCTTCCAATGAGCAAATTGATTCTGTCTCGGAATCCAATCATCGACCAGTTAATGAAGCTACTTTGACAGAATCTTCAGATCAACCAAAGGAGGCGTATGAAGAGGATTGTTATGCCGAGATACTAAAGGATGATATCATAAAATTAGATGAATCATCAATCTCAGGAGAGGGTAACACAGGAGCACAGGAACCCGCACAAATATATCCTGCACAAGGCACAGCACAACGGAGAATAAGATTAAGAAGGGTTGGGAATTCAAAGCATTCTTCTCCTGCTGTGGTTGGTTTCCCAAGCACAATAATGCAGTCGTCAAAGAGTACCTTCTTCGCCGGAATGAGCAACAGTCTGGTGGCACTAGTTTTCTTGGTTTTCACTTTGATATTTTTGGTTTTTGTTGGGTGGAGTCAAACAAGTGAAGTGTTAAGAGGGTGTAAATCATGA 1074 0.4376 MSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKYEPWDLPAKSFIRSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGSDVIGTKRTLVFHLGRAPKGERTEWIMHEYCINDKSQDSLVICRLKRNTEFRLSDHSNRASSSQRHPVNSHESGCAISEGGGIDQRDVCEQDKEVGCSSKRSSSSYGSPSNEQIDSVSESNHRPVNEATLTESSDQPKEAYEEDCYAEILKDDIIKLDESSISGEGNTGAQEPAQIYPAQGTAQRRIRLRRVGNSKHSSPAVVGFPSTIMQSSKSTFFAGMSNSLVALVFLVFTLIFLVFVGWSQTSEVLRGCKS* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00577 357 MobiDBLite consensus disorder prediction 199 242 - -
Lapu5g00577 357 MobiDBLite consensus disorder prediction 200 237 - -
Lapu5g00577 357 SUPERFAMILY NAC domain 4 149 IPR036093 GO:0003677|GO:0006355
Lapu5g00577 357 Pfam No apical meristem (NAM) protein 10 133 IPR003441 GO:0003677|GO:0006355
Lapu5g00577 357 ProSiteProfiles NAC domain profile. 8 150 IPR003441 GO:0003677|GO:0006355
Lapu5g00577 357 Gene3D NAC domain 17 171 IPR036093 GO:0003677|GO:0006355
Lapu5g00577 357 MobiDBLite consensus disorder prediction 157 173 - -
Lapu5g00577 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 220 - -
Lapu5g00577 357 MobiDBLite consensus disorder prediction 156 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00577 Lapu-Chr5 5219095 5222276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00577 1 266 NAC Transcription Factor Family AT2G27300 52.612 1.39e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu5g00577 NAM 1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00577 - - cam:101495489 493.812