Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00570 ATGGGGGATCTCCCACCTGGTTTTCGATTCTACCCAACAGAGGAAGAGCTTGTTGCCTTCTATCTATACAACCAGCTCGAGGGACAAAGACACGACACCAGCAGGGTTATTCCAGTAATTGACATCAATGGCATAGAGCCTTGGAACCTCCCAACACTTGCAGGGGAGCGCTGTCGTGGAGACACGGAACAATGGTTCTTCTTTTCGCCGAGACAAGAGAGAGAGATGAGAGGAGGTAGACCCAACAGAACCACCGCAAGTGGGTACTGGAAAGCCACTGGTTCTCCTGGCCACGTTTACTCTTCCGACAACAAAGTCATTGGGATGAAGAAAACCATGGTGTTTTACAAAGGGAAGGCTCCAACTGGAAGGAAAACCAAATGGAAGATGCATGAGTACAAAGCCATTCAACACTCTCACCAATCCAACACAATCCCTCCCATATTGAGGCACGAATTCAGCTTGTGTCGTGTTTATGTTATATCGGGAAGCTTTAGATCATTTGATCGACGACCACTAGAGATGCCAATAGCTGAATTACGAGTTGATGGGGATAGAGGTGCTGCTGCAACAAGTGCTCAACAGAGAGCACAAGTGGTGGATGCATCAAGTTCTTCTGATGATTCTGGTGATGCTCATGTGCATGAGGCTGGAGCAGGTTCAAGTGGGACACATTGGAATACAAGTAATAGGGTTGAGGAACCGCTTTGGGAATGGGAACAACTTAATTGGACATGA 738 0.4743 MGDLPPGFRFYPTEEELVAFYLYNQLEGQRHDTSRVIPVIDINGIEPWNLPTLAGERCRGDTEQWFFFSPRQEREMRGGRPNRTTASGYWKATGSPGHVYSSDNKVIGMKKTMVFYKGKAPTGRKTKWKMHEYKAIQHSHQSNTIPPILRHEFSLCRVYVISGSFRSFDRRPLEMPIAELRVDGDRGAAATSAQQRAQVVDASSSSDDSGDAHVHEAGAGSSGTHWNTSNRVEEPLWEWEQLNWT* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00570 245 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Lapu5g00570 245 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Lapu5g00570 245 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 190 - -
Lapu5g00570 245 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Lapu5g00570 245 MobiDBLite consensus disorder prediction 186 229 - -
Lapu5g00570 245 MobiDBLite consensus disorder prediction 191 207 - -
Lapu5g00570 245 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00570 Lapu-Chr5 5172760 5173764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00570 7 244 NAC Transcription Factor Family AT5G22380 58.091 4.50e-93 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu5g00570 NAM 2.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00570 - - gmx:100784960 431.024