Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00559 ATGTATCATCATCACCAACACCAAGGAAAAACCATTCATTCTTCTTCTAGGACGCCAATCCCCTCTGAGAGGCACATGTTCCTTCAAACAGGAAATGGGTCTGGAGATTCTGGACTTGTGCTTTCAACTGATGCTAAGCCAAGATTAAAATGGACACCAGATCTTCATACCAGGTTTATAGAAGCAGTCAATCAGTTAGGAGGAGCTGACAAAGCCACTCCAAAAACAGTAATGAAACTCATGGGGATTCCAGGGCTTACGTTATATCATCTAAAGAGCCATCTTCAGAAGTATAGATTGAGCAAGAATCTGCATGGGCAAAGCAACAACGTGACACACAAAATCACAACAAGTGCAGCAACTGGGGAGAGACTTTCTGAAACAAGTGGAACTCACATGAACAAATTAAGCCTTGGACCGCAGGCTAACAATTATACTAATTTTCAATACCTTTTATCCAGAGATTTGCATATAAGCGAGGCACTGCAGATGCAGATTGAGGTGCAGAGAAGGCTCAATGAACAACTTGAGGTACAAAGACACTTGCAGCTTAGGATAGAGGCCCAAGGAAAATACCTTCAGTCTGTGTTGGAGAAAGCTCAGGAGACTCTTGGCAGACAAAATTTGGGAATAGTAGGACTTGAAACTGCCAAAATTCAACTATCCGAGCTGGTGTCCAAAGTCTCATCTCAGTGCCTTAACTCAGCGTTGTCAGAGCTGAAGGAATTGCAAGGATTTTGTCCTCAGCAAACGCACACCAACCAGCCAAACGATTGCTCAATGGACAGTTGCCTCACATCCTGTGACAGATCACAAAAGGAGCAAGAGATTCAAAATGCCTTAAGACACTTCAACAGCCATGTGTTCATGGAACAAAAGGAAGCCACAGAAGCTCGCAACAACCTTAGGAACTCTGAACTAAAGTGGTGTGATGATGGGAAAAAGAACACCTTCCTTGCCCCATTGAGCAAGAATGAAGAAAGAAGAAACTATGCCTCTGAAACCAGTCCTGGCAACTTATCCATGTCCATTGGACTTGAAAGAGAAACTGAAAATAGAAGTAGCATGTATCCTGAAAGCCTAATCACAGAAAGCCAATCAGAAGGTGAGTTCCAGCACCGGAATAGAATCAAGACAGAAACAATGAAACCAGTAGATGAAAAAGTTTCTCAAGATTATAGGATGCCCACTTCTTACTTTGTAGCAACAAGATTGGACCTAAACAGCCATGGAGACAATGAAGCTGCAACCACCTGTAAACAACTGGACTTGAATAGATTCAGTTGGAGCTGA 1293 0.4277 MYHHHQHQGKTIHSSSRTPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHTRFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKITTSAATGERLSETSGTHMNKLSLGPQANNYTNFQYLLSRDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLETAKIQLSELVSKVSSQCLNSALSELKELQGFCPQQTHTNQPNDCSMDSCLTSCDRSQKEQEIQNALRHFNSHVFMEQKEATEARNNLRNSELKWCDDGKKNTFLAPLSKNEERRNYASETSPGNLSMSIGLERETENRSSMYPESLITESQSEGEFQHRNRIKTETMKPVDEKVSQDYRMPTSYFVATRLDLNSHGDNEAATTCKQLDLNRFSWS* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00559 430 Gene3D - 45 103 - -
Lapu5g00559 430 FunFam Myb family transcription factor 45 103 - -
Lapu5g00559 430 MobiDBLite consensus disorder prediction 12 35 - -
Lapu5g00559 430 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Lapu5g00559 430 MobiDBLite consensus disorder prediction 119 138 - -
Lapu5g00559 430 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
Lapu5g00559 430 Pfam MYB-CC type transfactor, LHEQLE motif 157 203 IPR025756 -
Lapu5g00559 430 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 321 IPR044848 GO:0003700
Lapu5g00559 430 Coils Coil 159 179 - -
Lapu5g00559 430 MobiDBLite consensus disorder prediction 1 35 - -
Lapu5g00559 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Lapu5g00559 430 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00559 Lapu-Chr5 5087347 5091322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00559 78 430 G2-like Transcription Factor Family AT3G04030 47.899 3.11e-93 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu5g00559 Myb_DNA-binding 2.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00559 - - pvu:PHAVU_005G123900g 803.897